G21903


Basic Information

Item Value
gene id G21903
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5209865 ~ 5210117 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26126
GGGAAATGTAATACTTGTTCGCACTTTGGCATTTAAATATCACTATAACCATTCAATGGTTTATTTtccatttgtacattttacaatttataaacaaaaaattaaaaatgtggttGTATACTgcaacaatccaaaacataaggcaaaaatcaacagaaaaatattttgaatagaGTTTGCCATGACCCTGTCAATTGGAGCTGATTTGAAGAAGGCAGTGTATGACATGGgttttaacaaatttaaaataaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26126 True 253 lncRNA 0.29 1 5209865 5210117

Neighbor

gene id symbol gene type direction distance location
LOC113530419 ccdc122 coding upstream 55438 5140401 ~ 5154427 (+)
wbp4 wbp4 coding upstream 82269 5122720 ~ 5127596 (+)
LOC113545806 NA coding upstream 492592 4708587 ~ 4717273 (+)
stk11ip stk11ip,LOC107663072 coding upstream 517837 4651006 ~ 4692028 (+)
LOC113545978 NA coding upstream 549742 4660009 ~ 4660123 (+)
nhej1 nhej1 coding downstream 29728 5239845 ~ 5255979 (+)
chmp4ba chmp4b,LOC108433697,LOC108272732,LOC106511320,LOC106566692,LOC107666153 coding downstream 266633 5476750 ~ 5489524 (+)
ergic3 ergic3,LOC107554160,LOC107685813,LOC107729749,LOC107666084 coding downstream 312807 5522924 ~ 5538437 (+)
si:dkey-6e2.2 LOC108272599,LOC108433672 coding downstream 469949 5680066 ~ 5700669 (+)
ripor3 LOC108271800,LOC107596833 coding downstream 679464 5889581 ~ 5948452 (+)
LOC117595874 NA non-coding upstream 291231 4917145 ~ 4918634 (+)
LOC113545969 NA non-coding upstream 296072 4911803 ~ 4913793 (+)
G21791 NA non-coding upstream 307865 4879209 ~ 4902000 (+)
G21771 NA non-coding upstream 375807 4830903 ~ 4834058 (+)
G21763 NA non-coding upstream 401438 4808123 ~ 4808427 (+)
G21928 NA non-coding downstream 47485 5257602 ~ 5257827 (+)
G21973 NA non-coding downstream 119778 5329895 ~ 5330285 (+)
G21982 NA non-coding downstream 124531 5334648 ~ 5334864 (+)
G22032 NA non-coding downstream 225649 5435766 ~ 5437469 (+)
G22033 ahcy,LOC107729767,LOC107708051,LOC107666127,LOC107596784,LOC107685809 non-coding downstream 227436 5437553 ~ 5463156 (+)
G21901 NA other upstream 1001 5208346 ~ 5208864 (+)
G21835 NA other upstream 121287 5088134 ~ 5088578 (+)
spega speg other upstream 450220 4754266 ~ 4759645 (+)
trnah-gug_1 NA other upstream 858117 4351677 ~ 4351748 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other upstream 882005 4275073 ~ 4327860 (+)
mych LOC108272607 other downstream 283605 5493722 ~ 5552974 (+)
atp5f1e NA other downstream 291528 5501645 ~ 5503231 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other downstream 507413 5717530 ~ 5756688 (+)
tmem74b NA other downstream 758081 5968198 ~ 5976002 (+)
abraa LOC107578753 other downstream 826597 6036714 ~ 6049905 (+)

Expression


Co-expression Network