G21982


Basic Information

Item Value
gene id G21982
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5334648 ~ 5334864 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26208
tGCTAatgtaagtattttatgaagaggtaagtctttagacgtcgtttgaagactgccagcgactcagctgttcggacatctaggggaagttcattccaccaccttggtgccagaacagagaagagtcttgatgcatgccttcttCGTACCcggagagatggtgggaccagtcgagcagtgctagaggatcggagggagcgtggtgcagtgcgaggtg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26208 True 217 lncRNA 0.52 1 5334648 5334864

Neighbor

gene id symbol gene type direction distance location
nhej1 nhej1 coding upstream 78669 5239845 ~ 5255979 (+)
LOC113530419 ccdc122 coding upstream 180221 5140401 ~ 5154427 (+)
wbp4 wbp4 coding upstream 207052 5122720 ~ 5127596 (+)
LOC113545806 NA coding upstream 617375 4708587 ~ 4717273 (+)
LOC113545978 NA coding upstream 674525 4660009 ~ 4660123 (+)
chmp4ba chmp4b,LOC108433697,LOC108272732,LOC106511320,LOC106566692,LOC107666153 coding downstream 141886 5476750 ~ 5489524 (+)
ergic3 ergic3,LOC107554160,LOC107685813,LOC107729749,LOC107666084 coding downstream 188060 5522924 ~ 5538437 (+)
si:dkey-6e2.2 LOC108272599,LOC108433672 coding downstream 345202 5680066 ~ 5700669 (+)
ripor3 LOC108271800,LOC107596833 coding downstream 554717 5889581 ~ 5948452 (+)
ywhaba ywhaba,LOC100305105,LOC108412308,LOC107584065,LOC107708121,LOC107595428 coding downstream 824473 6159337 ~ 6180525 (+)
G21973 NA non-coding upstream 4363 5329895 ~ 5330285 (+)
G21928 NA non-coding upstream 76821 5257602 ~ 5257827 (+)
G21903 NA non-coding upstream 124531 5209865 ~ 5210117 (+)
LOC117595874 NA non-coding upstream 416014 4917145 ~ 4918634 (+)
LOC113545969 NA non-coding upstream 420855 4911803 ~ 4913793 (+)
G22032 NA non-coding downstream 100902 5435766 ~ 5437469 (+)
G22033 ahcy,LOC107729767,LOC107708051,LOC107666127,LOC107596784,LOC107685809 non-coding downstream 102689 5437553 ~ 5463156 (+)
G22036 NA non-coding downstream 132402 5467266 ~ 5467481 (+)
LOC117599465 NA non-coding downstream 160061 5494925 ~ 5500908 (+)
G22054 NA non-coding downstream 213612 5548476 ~ 5610231 (+)
G21901 NA other upstream 125784 5208346 ~ 5208864 (+)
G21835 NA other upstream 246070 5088134 ~ 5088578 (+)
spega speg other upstream 575003 4754266 ~ 4759645 (+)
trnah-gug_1 NA other upstream 982900 4351677 ~ 4351748 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other upstream 1006788 4275073 ~ 4327860 (+)
mych LOC108272607 other downstream 158858 5493722 ~ 5552974 (+)
atp5f1e NA other downstream 166781 5501645 ~ 5503231 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other downstream 382666 5717530 ~ 5756688 (+)
tmem74b NA other downstream 633334 5968198 ~ 5976002 (+)
abraa LOC107578753 other downstream 701850 6036714 ~ 6049905 (+)

Expression


Co-expression Network