atp5f1e


Basic Information

Item Value
gene id atp5f1e
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5501645 ~ 5503231 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26261
aaaaaaatccctcgcCACAGTACCGGCAAAGAAGAGTACGTTCCTTCCGGTTCCTGTAGGCCTTGTCCTTGGTAAATATCGTCATTGGCAGGTTTTACCTGAACTCTCACAGTGACAGAGATGGTTTCATACTGGCGGCAGGCTGGACTCAGCTACATTAAGTACTCGGCGATCTGCGCCAGGGTGGTGCGGTCCGCGCTGAAACCTCAGCTCAGAACAGAAGCCATCAAAAACGCAGAAGCTAACGTCAAGGTCAATAAAGTGAAGACGACCTAATGAGCAGACCCAGAAGCCTGTCGTTCCCGATGTGAGAGTCGGCTGACAGAACATGGTTTCAGTTTATCACGTGTATTCCTGATAATAAATTATGATTCATTTTGTCAATACTACTTGATGTCTCGTTCATGGCCAACAGCGGACAGCATGTACCTAATGAGAGCAGCACTGCCAACACATAAGTTTAAGTTTAACTGGCTCCCAGtttaatattgcttttatacgaGCAGAAGACATGAATactgagtaactgacatttcagacacaatatggccaaataattagtttattttttcaaCGTGAACAGAAATAAATCCCAGAGAAGCCACACTGTTGTCTAGCTAGTGCTACATTCCTGTTATAGGTGCATCCTGGGAAactggcttcccttcttccttttcattttatctgagaagatttctttttctttttttttttaagtcagaagATATATTCTTGCAAAATAGATGGTTTGCGATGTCCGCTGCTGATGTCGCTGACTCTGCTGTAATGGTTTCAGTGGGACTGTTGGTAGAATTGGGATTTTATGtggcaaacagacaaacagagtgaataaacagtgaagtgtggttatactaaatataagcactcttggaacgccggctgtccaatcaaattagtggattagaactaactgttgtataataagtGTTGTACTACAGtgtatattcattaatttaccTTTTCTACAGTAGTAGAACAGTGCTGCTCATAGCCTTTAaaattggttgcacaattgcactatttgtccatatagtacacaataatagaagggaattatttataatcgcactatccgttgcactcagatgaggatgggttcccttttgagtctggttcctctcaaggtttcttccacaaatcatctcggggagtttttccttgccaccgtcacctctggcttgctcattagggataaattcacaggg
>XM_026917125.2
tccctcgcCACAGTACCGGCAAAGAAGAGTACGTTCCTTCCGGTTCCTGTAGGCCTTGTCCTTGGTAAATATCGTCATTGGCAGGTTTTACCTGAACTCTCACAGTGACAGAGATGGTTTCATACTGGCGGCAGGCTGGACTCAGCTACATTAAGTACTCGGCGATCTGCGCCAGGGTGGTGCGGTCCGCGCTGAAACCTCAGCTCAGAACAGAAGCCATCAAAAACGCAGAAGCTAACGTCAAGGTCAATAAAGTGAAGACGACCTAATGAGCAGACCCAGAAGCCTGTCGTTCCCGATGTGAGAGTCGGCTGACAGAACATGGTTTCAGTTTATCACGTGTATTCCTGATAATAAATTATGATTCATTTTGTCAATACTA

Function

GO:

id name namespace
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU26261 True 1226 lncRNA 0.42 3 5501645 5503231
XM_026917125.2 False 382 mRNA 0.48 3 5501652 5502394

Neighbor

gene id symbol gene type direction distance location
chmp4ba chmp4b,LOC108433697,LOC108272732,LOC106511320,LOC106566692,LOC107666153 coding upstream 12121 5476750 ~ 5489524 (+)
nhej1 nhej1 coding upstream 245666 5239845 ~ 5255979 (+)
LOC113530419 ccdc122 coding upstream 347218 5140401 ~ 5154427 (+)
wbp4 wbp4 coding upstream 374049 5122720 ~ 5127596 (+)
LOC113545806 NA coding upstream 784372 4708587 ~ 4717273 (+)
ergic3 ergic3,LOC107554160,LOC107685813,LOC107729749,LOC107666084 coding downstream 19693 5522924 ~ 5538437 (+)
si:dkey-6e2.2 LOC108272599,LOC108433672 coding downstream 176835 5680066 ~ 5700669 (+)
ripor3 LOC108271800,LOC107596833 coding downstream 386350 5889581 ~ 5948452 (+)
ywhaba ywhaba,LOC100305105,LOC108412308,LOC107584065,LOC107708121,LOC107595428 coding downstream 656106 6159337 ~ 6180525 (+)
esyt1b LOC108271768 coding downstream 744545 6247776 ~ 6305169 (+)
LOC117599465 NA non-coding upstream 737 5494925 ~ 5500908 (+)
G22036 NA non-coding upstream 34164 5467266 ~ 5467481 (+)
G22033 ahcy,LOC107729767,LOC107708051,LOC107666127,LOC107596784,LOC107685809 non-coding upstream 38489 5437553 ~ 5463156 (+)
G22032 NA non-coding upstream 64176 5435766 ~ 5437469 (+)
G21982 NA non-coding upstream 166781 5334648 ~ 5334864 (+)
G22054 NA non-coding downstream 45245 5548476 ~ 5610231 (+)
G22097 NA non-coding downstream 197497 5700728 ~ 5700976 (+)
G22110 NA non-coding downstream 205735 5708966 ~ 5709171 (+)
G22123 NA non-coding downstream 279075 5782306 ~ 5786459 (+)
G22072 NA non-coding downstream 289853 5793084 ~ 5794691 (+)
G21901 NA other upstream 292781 5208346 ~ 5208864 (+)
G21835 NA other upstream 413067 5088134 ~ 5088578 (+)
spega speg other upstream 742000 4754266 ~ 4759645 (+)
trnah-gug_1 NA other upstream 1149897 4351677 ~ 4351748 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other upstream 1173785 4275073 ~ 4327860 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other downstream 214299 5717530 ~ 5756688 (+)
tmem74b NA other downstream 464967 5968198 ~ 5976002 (+)
abraa LOC107578753 other downstream 533483 6036714 ~ 6049905 (+)
zc3h10 zc3h10,LOC108412311,LOC106583159 other downstream 712716 6215947 ~ 6227161 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other downstream 2402367 7905598 ~ 7930557 (+)

Expression


Co-expression Network