G22036


Basic Information

Item Value
gene id G22036
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5467266 ~ 5467481 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26276
CCTGTATATCAGTGTAAACTTGAACCTAGTGAAGAATAGGGCCCACCTGGTTGGTGAGGATTCGAGTCTTTTGGTTCTTATGATCTGTAAGAATGAGGAATGGGAACTTCGCTCCTTCTAGTCAATGTCTCCATTCTTCTAGGGTGGCTTTTATGGTGAGTAGTTATTCTTTGTCCACATCACAATTTCTCTCAGGTTCCTTCAATGTGAGTCCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26276 True 216 lncRNA 0.42 1 5467266 5467481

Neighbor

gene id symbol gene type direction distance location
nhej1 nhej1 coding upstream 211287 5239845 ~ 5255979 (+)
LOC113530419 ccdc122 coding upstream 312839 5140401 ~ 5154427 (+)
wbp4 wbp4 coding upstream 339670 5122720 ~ 5127596 (+)
LOC113545806 NA coding upstream 749993 4708587 ~ 4717273 (+)
LOC113545978 NA coding upstream 807143 4660009 ~ 4660123 (+)
chmp4ba chmp4b,LOC108433697,LOC108272732,LOC106511320,LOC106566692,LOC107666153 coding downstream 9269 5476750 ~ 5489524 (+)
ergic3 ergic3,LOC107554160,LOC107685813,LOC107729749,LOC107666084 coding downstream 55443 5522924 ~ 5538437 (+)
si:dkey-6e2.2 LOC108272599,LOC108433672 coding downstream 212585 5680066 ~ 5700669 (+)
ripor3 LOC108271800,LOC107596833 coding downstream 422100 5889581 ~ 5948452 (+)
ywhaba ywhaba,LOC100305105,LOC108412308,LOC107584065,LOC107708121,LOC107595428 coding downstream 691856 6159337 ~ 6180525 (+)
G22033 ahcy,LOC107729767,LOC107708051,LOC107666127,LOC107596784,LOC107685809 non-coding upstream 4110 5437553 ~ 5463156 (+)
G22032 NA non-coding upstream 29797 5435766 ~ 5437469 (+)
G21982 NA non-coding upstream 132402 5334648 ~ 5334864 (+)
G21973 NA non-coding upstream 136981 5329895 ~ 5330285 (+)
G21928 NA non-coding upstream 209439 5257602 ~ 5257827 (+)
LOC117599465 NA non-coding downstream 27444 5494925 ~ 5500908 (+)
G22054 NA non-coding downstream 80995 5548476 ~ 5610231 (+)
G22097 NA non-coding downstream 233247 5700728 ~ 5700976 (+)
G22110 NA non-coding downstream 241485 5708966 ~ 5709171 (+)
G22123 NA non-coding downstream 314825 5782306 ~ 5786459 (+)
G21901 NA other upstream 258402 5208346 ~ 5208864 (+)
G21835 NA other upstream 378688 5088134 ~ 5088578 (+)
spega speg other upstream 707621 4754266 ~ 4759645 (+)
trnah-gug_1 NA other upstream 1115518 4351677 ~ 4351748 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other upstream 1139406 4275073 ~ 4327860 (+)
mych LOC108272607 other downstream 26241 5493722 ~ 5552974 (+)
atp5f1e NA other downstream 34164 5501645 ~ 5503231 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other downstream 250049 5717530 ~ 5756688 (+)
tmem74b NA other downstream 500717 5968198 ~ 5976002 (+)
abraa LOC107578753 other downstream 569233 6036714 ~ 6049905 (+)

Expression


Co-expression Network