G22054


Basic Information

Item Value
gene id G22054
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5548476 ~ 5610231 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26298
acttggatagatattgtgaaggggtttttcttcaccaaagaaagaattctgtgattcatccactttagttgtcttccgtggtcttccaggccttttggtgttgctgagctcgccagttccttctttttaagaatgtaccaaattgttgatttggccactcctaaagtttctgctatctctctgataggtctgttttttcagcctaatgatggcctccttcacttgcgctccacacctctttggaccacatagtGAGTGTTCCCATGAACAACCACCAAGTGCAAATtcaactccagatcttttatctccttaatttgccatgaaataatgagaaaacaggccacatctggtcattaaactgcttatcagtcaatcgtccaattacttttgagcctgtgaaactggaggtactatgtaaaaaatggctggaATTCCTAAACgattgaatatatatttttgttaaaccccttgaaataaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26298 True 479 lncRNA 0.39 2 5548476 5610231

Neighbor

gene id symbol gene type direction distance location
ergic3 ergic3,LOC107554160,LOC107685813,LOC107729749,LOC107666084 coding upstream 10039 5522924 ~ 5538437 (+)
chmp4ba chmp4b,LOC108433697,LOC108272732,LOC106511320,LOC106566692,LOC107666153 coding upstream 58952 5476750 ~ 5489524 (+)
nhej1 nhej1 coding upstream 292497 5239845 ~ 5255979 (+)
LOC113530419 ccdc122 coding upstream 394049 5140401 ~ 5154427 (+)
wbp4 wbp4 coding upstream 420880 5122720 ~ 5127596 (+)
si:dkey-6e2.2 LOC108272599,LOC108433672 coding downstream 69835 5680066 ~ 5700669 (+)
ripor3 LOC108271800,LOC107596833 coding downstream 279350 5889581 ~ 5948452 (+)
ywhaba ywhaba,LOC100305105,LOC108412308,LOC107584065,LOC107708121,LOC107595428 coding downstream 549106 6159337 ~ 6180525 (+)
esyt1b LOC108271768 coding downstream 637545 6247776 ~ 6305169 (+)
matn4 matn4,LOC108412935,LOC107696469 coding downstream 989126 6599357 ~ 6621680 (+)
LOC117599465 NA non-coding upstream 47568 5494925 ~ 5500908 (+)
G22036 NA non-coding upstream 80995 5467266 ~ 5467481 (+)
G22033 ahcy,LOC107729767,LOC107708051,LOC107666127,LOC107596784,LOC107685809 non-coding upstream 85320 5437553 ~ 5463156 (+)
G22032 NA non-coding upstream 111007 5435766 ~ 5437469 (+)
G21982 NA non-coding upstream 213612 5334648 ~ 5334864 (+)
G22097 NA non-coding downstream 90497 5700728 ~ 5700976 (+)
G22110 NA non-coding downstream 98735 5708966 ~ 5709171 (+)
G22123 NA non-coding downstream 172075 5782306 ~ 5786459 (+)
G22072 NA non-coding downstream 182853 5793084 ~ 5794691 (+)
G22126 NA non-coding downstream 188872 5799103 ~ 5800012 (+)
atp5f1e NA other upstream 45245 5501645 ~ 5503231 (+)
G21901 NA other upstream 339612 5208346 ~ 5208864 (+)
G21835 NA other upstream 459898 5088134 ~ 5088578 (+)
spega speg other upstream 788831 4754266 ~ 4759645 (+)
trnah-gug_1 NA other upstream 1196728 4351677 ~ 4351748 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other downstream 107299 5717530 ~ 5756688 (+)
tmem74b NA other downstream 357967 5968198 ~ 5976002 (+)
abraa LOC107578753 other downstream 426483 6036714 ~ 6049905 (+)
zc3h10 zc3h10,LOC108412311,LOC106583159 other downstream 605716 6215947 ~ 6227161 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other downstream 2295367 7905598 ~ 7930557 (+)

Expression


Co-expression Network