G22130


Basic Information

Item Value
gene id G22130
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5804943 ~ 5807667 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26394
CCTTTAATACCCATGGGCTTTCTTTAAAATCTCTGTTGTCTTTGACCAGAATAACCAAATGGAACTGGGTTTGTACTGATTAGGCTAAGAACTATAATTATGACAGTTAGCTGGGACAGACCAAATGTTATAAGTTGAGGAGAACAAGGAACAAAGGGCAGAATGATCAAAGGAGTTTCATCCTAAGGGGTGACCACAGATCACCCTGCATGTCTCACCTCTGCTCATACAGCAGAAACCATAATCTGTAAATGTTTCCTGAACTTGTATGCTACTACTGAAATCAGCACACTGTTCACTATAGAGTATTTGTTAAAATGATAccaaacatgacagaaaaataGATTTGGAGATGTGGTGACCGCAAAATGCTCCTATCTTCTCCAAATCTCCAACTGTAATCCTAGGAGAAATTTTGTCTCTCTAACCATCCCTCTTGCTATGTGTGGGGTCAAAATTACCCTTTCATAAGAATTTCTAGGGAGTGAAAAATACTTGATGCctgaattttataaaaattgttataaattgttataaaaaagtctagaaaaagcccaaaatctaatcagttcatctgatAATTACAATGAATTCTATATAAATCGTAAACCAGGGCGctggacatagcaggtaatcttagggtcttaggcaagcatagGTTTGAAATACACctttgtcagtcagaggttactaagagtaacaatGTAGAGGTGTGAAGGCGATGTCCGACGCAGTAATAAGCTCTAGCTCCATCCCAACACAacatggcgatgtagcttacataAGGTTAAGGTCgttgaactgctggatgtccaggtggtgctctgaaaactatgtgggctttatagataaattggagtagttttgagggcaaggctggcctgttagggtggGATGGTATCCGTCCTACTTGGGAAggagctgctctcatttctttcaGCATAGCTCATAGTCTCAGAGCAGGCCTAGctaatcagtgacaatccagaggcaaggccagggagcagaccaATAGGCTAAACCGACCATCTGCTAGTTGCACTGAGACGTCACTCAGGTTCCATATTATATTGAGACTGTGTTTGTTCAccgagctaaaaaaaaaatgtagaaatactgaGAAAGTTTCTTTTAGTatcctaattaacataaaattaaatcatactgaatgtaccaccagcacctttgatctgaagctaggactgttaaatataaGATCTCTTAAGCACTTATTGTTAAAGAAACTATTaatgatcaggagtttaatgtactgtgcttaacagaaacatgaattaaaccaaatgagtatgtagcattaaatgaagttAGTCCGCCTGTGTCCATTCTAAATTCAGTAGGGTTTAATCAggatgtaataggacccactcataatgTTGGTCACAGTCCTGATCTAATAAAAAcctttggattaaatatagaaaatatagtcacatttccacagtctgaaatTATCCCTGATCATTACctaatctcatttaaaatgtgtcttagtcaAAATATATACACCTTGCCACATTACCACGTCAAACGTACATTCATGTCAGAGTTTTAactcccagagttatcaactatgattggatcactgtctgaccccacagaatttgatcaggcaactgaatgcttagagtcaatgCTTAGCTACACTCTCGATAATGTAGCTCTAACTCTGTAGACTGATATATACCTATATCAGATCAGCGATTAGAATGTTTTTCTCCCCTTCGAGAGAcagaactaatttcactaatttcctcatcaaaatcatcaacttgtgtactTTATCCCTTACCCACAGgtttcttcaaacagaaaataccagaaacaatcaaacctcttctaaaaataatcagttctttTCTTaccactggctatgtacctaaatccttaaactatcaaacccctgattaaaaaaacctaacctcaacccctgtcagctgtccaactataggccaatatcaaacctcccctttatctccaagatcctagaaaaggttgtagcacagcagctatgctcatacttacataggaataacattcatgaaatgtatcagtcaggatttaggcctcatcatagcacagagacagcgctggttaaagcagtaaatgacctactactggcctccgATTGGGTTTGTGTCTCCTtgtttgtgttgcttgaccttaatGCAGCTTTTGACCTCAATTCAGACACCACTGATCATACTAGTCTCCTTAAGAGACTAGAAAATGCTGGAGTTAAGAGAACAAAACACTCCtagctcaggtcttatttgactgatcattagatgtaaatggtgacttctttACATATACTAAGATAAAGTTTAGTGTCCGCAAgtctctgttttaggcccactgcttttttctttatatatgctacctctgggtaaaatgattcgtaaacatggtattagcttcccctgttacgctgatgacacacagttgtatgtttcagcaaagccagatgacagacaccagcttaataaagttgaggaatgtgtaaaggacattagacactggatgctcattaacttccttctacttaattctgacaagacaaaACTACTTGCACTAgaaccacatgcagttagaagtaagctttcttgaattgcactttttgactacaTAGCACATtacagaagggaattatttatatatttatatattatttataatcgcactatccagtgtcacccagtgttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26394 True 2725 lncRNA 0.38 1 5804943 5807667

Neighbor

gene id symbol gene type direction distance location
si:dkey-6e2.2 LOC108272599,LOC108433672 coding upstream 104274 5680066 ~ 5700669 (+)
ergic3 ergic3,LOC107554160,LOC107685813,LOC107729749,LOC107666084 coding upstream 266506 5522924 ~ 5538437 (+)
chmp4ba chmp4b,LOC108433697,LOC108272732,LOC106511320,LOC106566692,LOC107666153 coding upstream 315419 5476750 ~ 5489524 (+)
nhej1 nhej1 coding upstream 548964 5239845 ~ 5255979 (+)
LOC113530419 ccdc122 coding upstream 650516 5140401 ~ 5154427 (+)
ripor3 LOC108271800,LOC107596833 coding downstream 81914 5889581 ~ 5948452 (+)
ywhaba ywhaba,LOC100305105,LOC108412308,LOC107584065,LOC107708121,LOC107595428 coding downstream 351670 6159337 ~ 6180525 (+)
esyt1b LOC108271768 coding downstream 440109 6247776 ~ 6305169 (+)
matn4 matn4,LOC108412935,LOC107696469 coding downstream 791690 6599357 ~ 6621680 (+)
or134-1 LOC108271602,LOC108271622,LOC108435678,LOC103033030 coding downstream 828941 6636608 ~ 6637549 (+)
G22126 NA non-coding upstream 4931 5799103 ~ 5800012 (+)
G22072 NA non-coding upstream 10252 5793084 ~ 5794691 (+)
G22123 NA non-coding upstream 18484 5782306 ~ 5786459 (+)
G22110 NA non-coding upstream 95772 5708966 ~ 5709171 (+)
G22097 NA non-coding upstream 103967 5700728 ~ 5700976 (+)
G22070 chd6,LOC103367963,LOC105006450 non-coding downstream 3090 5810757 ~ 5811035 (+)
G22074 NA non-coding downstream 6680 5814347 ~ 5816578 (+)
G22076 NA non-coding downstream 17449 5825116 ~ 5826948 (+)
G22131 NA non-coding downstream 21631 5829298 ~ 5829650 (+)
G22133 NA non-coding downstream 24312 5831979 ~ 5832212 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other upstream 48255 5717530 ~ 5756688 (+)
mych LOC108272607 other upstream 251969 5493722 ~ 5552974 (+)
atp5f1e NA other upstream 301712 5501645 ~ 5503231 (+)
G21901 NA other upstream 596079 5208346 ~ 5208864 (+)
G21835 NA other upstream 716365 5088134 ~ 5088578 (+)
tmem74b NA other downstream 160531 5968198 ~ 5976002 (+)
abraa LOC107578753 other downstream 229047 6036714 ~ 6049905 (+)
zc3h10 zc3h10,LOC108412311,LOC106583159 other downstream 408280 6215947 ~ 6227161 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other downstream 2097931 7905598 ~ 7930557 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other downstream 2600138 8407805 ~ 8439341 (+)

Expression


Co-expression Network