G22133


Basic Information

Item Value
gene id G22133
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5831979 ~ 5832212 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26397
cttttttcagaatgtacccaactgttgatttggccacacctaaggtttttgctatctctcttatagatttatgttgttttttcagcctaatgatggcctccttcacttgcattgagatctccttggacttcatattggtagctcgaacagctgccaaatgccaactcaatacctgatatcaactccagaccttttagctgcttcatttatctttttatttatctaattcaagta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26397 True 234 lncRNA 0.37 1 5831979 5832212

Neighbor

gene id symbol gene type direction distance location
si:dkey-6e2.2 LOC108272599,LOC108433672 coding upstream 131310 5680066 ~ 5700669 (+)
ergic3 ergic3,LOC107554160,LOC107685813,LOC107729749,LOC107666084 coding upstream 293542 5522924 ~ 5538437 (+)
chmp4ba chmp4b,LOC108433697,LOC108272732,LOC106511320,LOC106566692,LOC107666153 coding upstream 342455 5476750 ~ 5489524 (+)
nhej1 nhej1 coding upstream 576000 5239845 ~ 5255979 (+)
LOC113530419 ccdc122 coding upstream 677552 5140401 ~ 5154427 (+)
ripor3 LOC108271800,LOC107596833 coding downstream 57369 5889581 ~ 5948452 (+)
ywhaba ywhaba,LOC100305105,LOC108412308,LOC107584065,LOC107708121,LOC107595428 coding downstream 327125 6159337 ~ 6180525 (+)
esyt1b LOC108271768 coding downstream 415564 6247776 ~ 6305169 (+)
matn4 matn4,LOC108412935,LOC107696469 coding downstream 767145 6599357 ~ 6621680 (+)
or134-1 LOC108271602,LOC108271622,LOC108435678,LOC103033030 coding downstream 804396 6636608 ~ 6637549 (+)
G22131 NA non-coding upstream 2329 5829298 ~ 5829650 (+)
G22076 NA non-coding upstream 5031 5825116 ~ 5826948 (+)
G22074 NA non-coding upstream 15401 5814347 ~ 5816578 (+)
G22070 chd6,LOC103367963,LOC105006450 non-coding upstream 20944 5810757 ~ 5811035 (+)
G22130 NA non-coding upstream 24312 5804943 ~ 5807667 (+)
G22127 NA non-coding downstream 8222 5840434 ~ 5842906 (+)
G22125 NA non-coding downstream 10945 5843157 ~ 5850947 (+)
G22134 NA non-coding downstream 21238 5853450 ~ 5853696 (+)
G22138 NA non-coding downstream 32951 5865163 ~ 5865397 (+)
G22139 NA non-coding downstream 33821 5866033 ~ 5866375 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other upstream 75291 5717530 ~ 5756688 (+)
mych LOC108272607 other upstream 279005 5493722 ~ 5552974 (+)
atp5f1e NA other upstream 328748 5501645 ~ 5503231 (+)
G21901 NA other upstream 623115 5208346 ~ 5208864 (+)
G21835 NA other upstream 743401 5088134 ~ 5088578 (+)
tmem74b NA other downstream 135986 5968198 ~ 5976002 (+)
abraa LOC107578753 other downstream 204502 6036714 ~ 6049905 (+)
zc3h10 zc3h10,LOC108412311,LOC106583159 other downstream 383735 6215947 ~ 6227161 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other downstream 2073386 7905598 ~ 7930557 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other downstream 2575593 8407805 ~ 8439341 (+)

Expression


Co-expression Network