G22592


Basic Information

Item Value
gene id G22592
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6481972 ~ 6483148 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26889
ttcagatcaacggtgctggctatgcattcggtatggtttaattttatgttaattaggttactaaaacaaactttctgagtatgtctataattttgtttagctcggggaacagacacagtctcaatacggtggaacctaagtgacgactcagtgcagctagcagacggtcggtttaactaggcctgttctgagactatgtgctatgctgcaagaaatgagagcagcaccttcccgagtgggatggacaccgtcccgccctaacaggccagccttgccctcaaagttagtccaattatctataaagcccacattgttttcggagcaccacctggacatccagcagttcagcgaccataacctgctgtaagctacatcgccatgccgcattgggatggggccagagcatactacagcatcggacatcgccttcgctaatttacacacctctaccaagttaatcttagtaacctcagactgatgaaggcgtatatcattagctcctacatgaataactatctttgagaacctgtgcttgcctaagaccctaagattacctgctatgtccggcgccctggctcccggtatacacctaactaaagctgctggtgcccctaaaggcctagctaatttcacgtgccgcaagatagagtcacctataaccagagctctttcaggtttctcagcgggtgcttcactgaggagagcaaacctgttggacacgtgaagcggagaggagtggtgctcctgtgggcgagccttagcgttagctttggctttgcgattatgccgccgagtcgtcacccattcgccccgctgtgagggctctaatgccggagttgggggattactaactccgcctaaggcatccagactttcccctacagaaactacgctgctctcactctcactaaccctctctagagactggatgcgcacctctaatgcagcaatcttctccgtcagagagctaactaacatgcatttatcacaaataaagttaatactaacgacggaggaagagtgactaaacatcctgcactcaacacactgaacaagctgaatgttagacatgttgtttaacgcaccttagtcgaagatttgttgatattattgtagacggcgtggatccggtgtgaatggcctccgctcgctgtcttgacaaaatacaaaagcgcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26889 True 1177 lncRNA 0.48 1 6481972 6483148

Neighbor

gene id symbol gene type direction distance location
esyt1b LOC108271768 coding upstream 176803 6247776 ~ 6305169 (+)
ywhaba ywhaba,LOC100305105,LOC108412308,LOC107584065,LOC107708121,LOC107595428 coding upstream 301447 6159337 ~ 6180525 (+)
ripor3 LOC108271800,LOC107596833 coding upstream 533520 5889581 ~ 5948452 (+)
si:dkey-6e2.2 LOC108272599,LOC108433672 coding upstream 781303 5680066 ~ 5700669 (+)
ergic3 ergic3,LOC107554160,LOC107685813,LOC107729749,LOC107666084 coding upstream 943535 5522924 ~ 5538437 (+)
matn4 matn4,LOC108412935,LOC107696469 coding downstream 116209 6599357 ~ 6621680 (+)
or134-1 LOC108271602,LOC108271622,LOC108435678,LOC103033030 coding downstream 153460 6636608 ~ 6637549 (+)
LOC113526908 NA coding downstream 155935 6639083 ~ 6640030 (+)
LOC113526899 NA coding downstream 170834 6653982 ~ 6654911 (+)
LOC113526892 NA coding downstream 183790 6666938 ~ 6667705 (+)
G22582 NA non-coding upstream 19721 6458924 ~ 6462251 (+)
G22554 NA non-coding upstream 84782 6396973 ~ 6397190 (+)
LOC113532782 NA non-coding upstream 165268 6313482 ~ 6316704 (+)
G22427 NA non-coding upstream 273282 6205718 ~ 6208690 (+)
G22370 NA non-coding upstream 427354 6054144 ~ 6054618 (+)
G22598 NA non-coding downstream 18072 6501220 ~ 6501451 (+)
G22621 NA non-coding downstream 74643 6557791 ~ 6558001 (+)
G22673 NA non-coding downstream 140095 6623243 ~ 6623449 (+)
G22683 NA non-coding downstream 167957 6651105 ~ 6651393 (+)
G22765 NA non-coding downstream 316928 6800076 ~ 6800790 (+)
zc3h10 zc3h10,LOC108412311,LOC106583159 other upstream 254811 6215947 ~ 6227161 (+)
abraa LOC107578753 other upstream 432067 6036714 ~ 6049905 (+)
tmem74b NA other upstream 505970 5968198 ~ 5976002 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other upstream 725284 5717530 ~ 5756688 (+)
atp5f1e NA other upstream 978741 5501645 ~ 5503231 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other downstream 1422450 7905598 ~ 7930557 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other downstream 1924657 8407805 ~ 8439341 (+)
cysltr3 LOC108271499 other downstream 2513786 8996934 ~ 9004941 (+)
hmga1b NA other downstream 2967777 9450925 ~ 9454462 (+)
LOC113532547 LOC108271588 other downstream 3108793 9591941 ~ 9603506 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G227157 NA non-coding NW_019170638.1 APWO02000236.1 27052 ~ 31298 (+)