G22683


Basic Information

Item Value
gene id G22683
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6651105 ~ 6651393 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU27010
aaaaggggGTAGAGCATTTTCatatttagctcctaaactttggaatagccttcctgacagtgttcggggctcagacacagtctcccagttcaaacgtagattaaagacatatatctttagccaggcatacacttaacacataccataaccttgtacttcagtacatctgattaattgcacattatgatttagggcttactaatattatgaacagcagctacgctaattcctttctacttgtttcccttcttctacccatcctgaggcacatagagattgtgccagctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27010 True 289 lncRNA 0.40 1 6651105 6651393

Neighbor

gene id symbol gene type direction distance location
LOC113526908 NA coding upstream 11075 6639083 ~ 6640030 (+)
or134-1 LOC108271602,LOC108271622,LOC108435678,LOC103033030 coding upstream 13556 6636608 ~ 6637549 (+)
matn4 matn4,LOC108412935,LOC107696469 coding upstream 29425 6599357 ~ 6621680 (+)
esyt1b LOC108271768 coding upstream 345936 6247776 ~ 6305169 (+)
ywhaba ywhaba,LOC100305105,LOC108412308,LOC107584065,LOC107708121,LOC107595428 coding upstream 470580 6159337 ~ 6180525 (+)
LOC113526899 NA coding downstream 2589 6653982 ~ 6654911 (+)
LOC113526892 NA coding downstream 15545 6666938 ~ 6667705 (+)
LOC117596064 LOC108271622,LOC108271602,LOC108435678 coding downstream 21859 6673252 ~ 6674193 (+)
LOC113526885 LOC108271621,LOC108435693,LOC103036533 coding downstream 29618 6681011 ~ 6682780 (+)
LOC113526877 LOC108271619 coding downstream 36901 6688294 ~ 6689235 (+)
G22673 NA non-coding upstream 27656 6623243 ~ 6623449 (+)
G22621 NA non-coding upstream 93104 6557791 ~ 6558001 (+)
G22598 NA non-coding upstream 149654 6501220 ~ 6501451 (+)
G22592 NA non-coding upstream 167957 6481972 ~ 6483148 (+)
G22582 NA non-coding upstream 188854 6458924 ~ 6462251 (+)
G22765 NA non-coding downstream 148683 6800076 ~ 6800790 (+)
G22931 NA non-coding downstream 392182 7043575 ~ 7043782 (+)
G23115 NA non-coding downstream 674970 7326363 ~ 7370530 (+)
LOC117599372 NA non-coding downstream 689916 7341309 ~ 7343059 (+)
G23258 NA non-coding downstream 1001638 7653031 ~ 7653288 (+)
zc3h10 zc3h10,LOC108412311,LOC106583159 other upstream 423944 6215947 ~ 6227161 (+)
abraa LOC107578753 other upstream 601200 6036714 ~ 6049905 (+)
tmem74b NA other upstream 675103 5968198 ~ 5976002 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other upstream 894417 5717530 ~ 5756688 (+)
atp5f1e NA other upstream 1147874 5501645 ~ 5503231 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other downstream 1254205 7905598 ~ 7930557 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other downstream 1756412 8407805 ~ 8439341 (+)
cysltr3 LOC108271499 other downstream 2345541 8996934 ~ 9004941 (+)
hmga1b NA other downstream 2799532 9450925 ~ 9454462 (+)
LOC113532547 LOC108271588 other downstream 2940548 9591941 ~ 9603506 (+)

Expression


Co-expression Network