G24177


Basic Information

Item Value
gene id G24177
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9612389 ~ 9612613 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU28656
ATTgttttcaacatttattttaaaaaatttgctggaaaaaaaaattacatagcATCAACACTGTACAGAGTGGTCTATAGTAAGAtcaatgtattttaatatggCGgggtaaacatttaaatttgaaataCAACGGATAAGTAGACTTACAGACTGGTACTCCATTTCATGGCTGCTATGTAGAAATGTGGGCAACTGTTGAGGACcacctccttctctttctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28656 True 225 lncRNA 0.34 1 9612389 9612613

Neighbor

gene id symbol gene type direction distance location
anks1ab LOC108272262,LOC108433676,LOC107595407,LOC107666177 coding upstream 41870 9540608 ~ 9570519 (+)
pacsin1b pacsin1,LOC108271966 coding upstream 112222 9473539 ~ 9500167 (+)
nudt3b nudt3,LOC108271898 coding upstream 144599 9454676 ~ 9467790 (+)
abhd14b abhd14b,LOC107580032 coding upstream 516647 9088734 ~ 9095742 (+)
si:ch211-161c3.5 LOC108272269,LOC107587572 coding upstream 548891 9050896 ~ 9063498 (+)
LOC113533334 tulp1,LOC108441591,LOC107587584,LOC107744370 coding downstream 15962 9628575 ~ 9636737 (+)
tead3b tead3,LOC108441590,LOC107665997,LOC105907572 coding downstream 26492 9639105 ~ 9672645 (+)
smpd2b LOC108271873 coding downstream 69718 9682331 ~ 9692966 (+)
pkp1b pkp1 coding downstream 81886 9694499 ~ 9711838 (+)
nav1b nav1 coding downstream 176050 9788663 ~ 9855541 (+)
G24162 NA non-coding upstream 20743 9591428 ~ 9591646 (+)
G24160 NA non-coding upstream 22804 9589318 ~ 9589585 (+)
G24159 NA non-coding upstream 23881 9588297 ~ 9588508 (+)
G24137 NA non-coding upstream 93402 9518666 ~ 9518987 (+)
G24114 LOC106567293 non-coding upstream 140815 9468544 ~ 9471574 (+)
G24178 NA non-coding downstream 499 9613112 ~ 9615463 (+)
G24183 NA non-coding downstream 46020 9658633 ~ 9669391 (+)
LOC113534952 NA non-coding downstream 125404 9738017 ~ 9739451 (+)
G24283 NA non-coding downstream 145972 9758585 ~ 9758966 (+)
G24289 NA non-coding downstream 156675 9769288 ~ 9769501 (+)
LOC113532547 LOC108271588 other upstream 8883 9591941 ~ 9603506 (+)
hmga1b NA other upstream 157927 9450925 ~ 9454462 (+)
cysltr3 LOC108271499 other upstream 607448 8996934 ~ 9004941 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other upstream 1173048 8407805 ~ 8439341 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other upstream 1681832 7905598 ~ 7930557 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other downstream 262095 9874708 ~ 9923165 (+)
manbal manbal other downstream 325752 9938365 ~ 9941187 (+)
G24500 NA other downstream 585353 10197966 ~ 10198455 (+)
G25029 NA other downstream 1293587 10906200 ~ 10908572 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other downstream 2591828 12204441 ~ 12213657 (+)

Expression


Co-expression Network