G24289


Basic Information

Item Value
gene id G24289
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9769288 ~ 9769501 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU28780
GCCCTTCAGACCCTCAGCAGTGTCCATTTCTAATCAAAGGACTGCTGTTAGCTCGATATTTTCACATTAATAGCAACACACACTATCAGTGCCACTACCCTGTGGTCCAGCTTTCCAAAAAAAGGTCAGTGGTGGCCCTAGGGTGGTCCCTGTCCATTGAAGGACAGGGTAGAGGGCTGACAAATTGTACATAACAGCAAATAGGCTACTGTga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28780 True 214 lncRNA 0.47 1 9769288 9769501

Neighbor

gene id symbol gene type direction distance location
pkp1b pkp1 coding upstream 57450 9694499 ~ 9711838 (+)
smpd2b LOC108271873 coding upstream 76322 9682331 ~ 9692966 (+)
tead3b tead3,LOC108441590,LOC107665997,LOC105907572 coding upstream 96643 9639105 ~ 9672645 (+)
LOC113533334 tulp1,LOC108441591,LOC107587584,LOC107744370 coding upstream 132551 9628575 ~ 9636737 (+)
anks1ab LOC108272262,LOC108433676,LOC107595407,LOC107666177 coding upstream 198769 9540608 ~ 9570519 (+)
nav1b nav1 coding downstream 19162 9788663 ~ 9855541 (+)
mybphb mybph,LOC107696393,LOC108441582,LOC107587590,LOC107740275,LOC107744364 coding downstream 86470 9855971 ~ 9868275 (+)
LOC113536587 LOC108271763,LOC108410937,LOC107666076,LOC107740256,LOC797048,LOC107696440,LOC107587593 coding downstream 194472 9963973 ~ 9974363 (+)
zgc:109913 LOC108271762 coding downstream 205941 9975442 ~ 9978699 (+)
pltp pltp coding downstream 242034 10011535 ~ 10025366 (+)
G24283 NA non-coding upstream 10322 9758585 ~ 9758966 (+)
LOC113534952 NA non-coding upstream 29837 9738017 ~ 9739451 (+)
G24183 NA non-coding upstream 99897 9658633 ~ 9669391 (+)
G24178 NA non-coding upstream 153825 9613112 ~ 9615463 (+)
G24177 NA non-coding upstream 156675 9612389 ~ 9612613 (+)
G24354 NA non-coding downstream 99106 9868607 ~ 9954984 (+)
G24390 NA non-coding downstream 224061 9993562 ~ 9995992 (+)
LOC117599366 NA non-coding downstream 236036 10005537 ~ 10010607 (+)
G24463 NA non-coding downstream 373508 10143009 ~ 10143237 (+)
G24476 NA non-coding downstream 382261 10151762 ~ 10152208 (+)
LOC113532547 LOC108271588 other upstream 165782 9591941 ~ 9603506 (+)
hmga1b NA other upstream 314826 9450925 ~ 9454462 (+)
cysltr3 LOC108271499 other upstream 764347 8996934 ~ 9004941 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other upstream 1329947 8407805 ~ 8439341 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other upstream 1838731 7905598 ~ 7930557 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other downstream 105207 9874708 ~ 9923165 (+)
manbal manbal other downstream 168864 9938365 ~ 9941187 (+)
G24500 NA other downstream 428465 10197966 ~ 10198455 (+)
G25029 NA other downstream 1136699 10906200 ~ 10908572 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other downstream 2434940 12204441 ~ 12213657 (+)

Expression


Co-expression Network