G24354


Basic Information

Item Value
gene id G24354
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9868607 ~ 9954984 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU28873
AACATACTAATTTAAAATTGAATCTAACAGAAATTTTAATGAATCTAGGAAAAGTGGTGTTACGATAAGAAATGTTTCATGGATAGctttaaattgcattttaacTAGTTTGGGTTCTGTGGGTTAAAAAGTTCAGGAGTAAAAGGTTACAATAGATAGATTAGagacatgaaataaatctgtgaaagGTGTGCCTGGCTACAAAATGTTTGATTCCTCTGTCTTAAAAGTGTGAAACAGAAcaaaagagcaataaaacaggACAGCTGGCAAATTTGTGTTCCTTTGTATTCCTACAAAGGAACAGAAGCCTTTGTAACAAACAGATATGAGCAGCTGGGTCATTTCAGGTTCTACACACAGACAACCTTGGACACAGCAAAGCcatgaacagaaataaatagaatatCTGGGCTGCATTGCACATGGATGCCAATCATACAACCTTCACTGGTACTTAACGTCAATTGCAAAGGGCACTATGCATGACGTCCATTATCGCAACTTCCTAGAGTGTCAGACATAGTGTTACAAGATGTTTGGCATGTATGGGACTCACTGTTTTCCCCACTTCTGTGTAACTGCATTCTATATTACTCACATATTTTTGGAAGCGCTAACAAGCATAAAGGCTACTTTTAAAATGGTACTTTAAGAGGTTTACAGTATGTGCCAAAAAAATGACACGtcaaacagaacaataaaatgtactaaataTATACTagtaaaaatgagtaaatacatataaaatgataaaataattaatagtaaaatgacatttttaactaAAActatgacattttaattttagtcaTCTAGCCAAAATCGTCTTTTCACTGCACAGTTACTCTTGGCCAGTGTGTTTTTCATTGACCAGCATTAGGAAAACATccagcagaagtgtgtgttggtgcagCGCTATGGACTCTTTTTTTACAAAAACCAGACACAGGGTAAAAATGATTTCCAGTAAGTAATGATTATTCCCTACAGAAACATCAGCATTATAATCATCTTCGCTCACTCACAATGGAATTATGTTATGCTGAGTTTAATCTTCAAAGATACAGTAGATATGTCCAGAATTGTTGGGAACCACTCAGCAATAAAAAAACCTCCAAGCTGGATATGGTTTGTGGAGGAATTTATTCACAGCTATAAGGGTAAGGTAAGGTTAAGTGACATAATGATGGGTCGCTAGATAGTTTATTGAAATGGtgtatgcattatttttatattgaccTGAATTCAATTCATTTGCATTAACTGCTTTGGAACGAGATAAAAAATTCTGGATAGGTGAAAGATAGCATCCTTTTGctactgttagctagctatatttataGTTAACTGAGAGCTGAGTTAACACTCATAGTAcgaaagatgaatgaattgttTAAGTGACAGATGTCATCAACAGCTACATGGTAGTCACTCTAGGTGAGGAGGAACGAAGAGCCACTCAAAATCGAGATTAAACTCTGCAGGTTGCCTTGAGAGTCTGTCAAATTAGCTTTATCCCATTGTAACTTCAGTTTATTTTCACTCTAAACTCAACTTGCACTGATATTTCACGCTTTGATTCCAATACAGTTTGTAGTTTTTCTATAACACTTACCGTAAACTGTGTTTGACACGGCCATCGTTGTTGTTATGGAAGTGAAGTTACCATGCGAAGGCTACTTCTGCCAGCAAAAAGCtgttgtgtgtacatgtgctgCAGGCTGTGTTATATTGCCTATACTGCAATTACACCAGCAAATTAGACTTCTTGCAGCAACTCATTTGTTTCATagcattttttccccagctAGTCCCAAATACTAGCTTTTTCTTCTGTGATTGGCATACACcgctgggcaaaaaaatgggccaggcccaaaatgggaaaacattaagcttttaatggtcttaacaacaaatcattggtcaggaaatgagcaagaatgaaacaaatagataaaggaagttagtatgggaagcttttccctttggtttctttaaatgtttaagccttgtgatTCCTGATGGGTTGCATCAGgtgcggcagataactaaataatcactaatcttttaagaaaaaaaaaaacatcccagaagatatttttggaaaattttgtacactcaGTCAGACATGTGTTAgcttgaattttacatcaaacattttaatcattagcatgattttacctttgtgtacaagaagtcAAAGTCAAAGCTAGCTTTATTGTCAGTTTTAGCACACTGCATggcaatggattaaaaacacacagttcCTTCAGGAAACTACCATGCAACGTGTAGTAGACATTGATAAGGACTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28873 True 2322 lncRNA 0.36 2 9868607 9954984

Neighbor

gene id symbol gene type direction distance location
mybphb mybph,LOC107696393,LOC108441582,LOC107587590,LOC107740275,LOC107744364 coding upstream 332 9855971 ~ 9868275 (+)
nav1b nav1 coding upstream 13066 9788663 ~ 9855541 (+)
pkp1b pkp1 coding upstream 156769 9694499 ~ 9711838 (+)
smpd2b LOC108271873 coding upstream 175641 9682331 ~ 9692966 (+)
tead3b tead3,LOC108441590,LOC107665997,LOC105907572 coding upstream 195962 9639105 ~ 9672645 (+)
LOC113536587 LOC108271763,LOC108410937,LOC107666076,LOC107740256,LOC797048,LOC107696440,LOC107587593 coding downstream 8989 9963973 ~ 9974363 (+)
zgc:109913 LOC108271762 coding downstream 20458 9975442 ~ 9978699 (+)
pltp pltp coding downstream 56551 10011535 ~ 10025366 (+)
ncoa5 ncoa5 coding downstream 79649 10034633 ~ 10044782 (+)
nat8l2 LOC108271756 coding downstream 248590 10203574 ~ 10208434 (+)
G24289 NA non-coding upstream 99106 9769288 ~ 9769501 (+)
G24283 NA non-coding upstream 109641 9758585 ~ 9758966 (+)
LOC113534952 NA non-coding upstream 129156 9738017 ~ 9739451 (+)
G24183 NA non-coding upstream 199216 9658633 ~ 9669391 (+)
G24178 NA non-coding upstream 253144 9613112 ~ 9615463 (+)
G24390 NA non-coding downstream 38578 9993562 ~ 9995992 (+)
LOC117599366 NA non-coding downstream 50553 10005537 ~ 10010607 (+)
G24463 NA non-coding downstream 188025 10143009 ~ 10143237 (+)
G24476 NA non-coding downstream 196778 10151762 ~ 10152208 (+)
G24494 NA non-coding downstream 225259 10180243 ~ 10180482 (+)
LOC113532547 LOC108271588 other upstream 265101 9591941 ~ 9603506 (+)
hmga1b NA other upstream 414145 9450925 ~ 9454462 (+)
cysltr3 LOC108271499 other upstream 863666 8996934 ~ 9004941 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other upstream 1429266 8407805 ~ 8439341 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other upstream 1938050 7905598 ~ 7930557 (+)
G24500 NA other downstream 242982 10197966 ~ 10198455 (+)
G25029 NA other downstream 951216 10906200 ~ 10908572 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other downstream 2249457 12204441 ~ 12213657 (+)
G25908 LOC108272198 other downstream 2571186 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 2774009 12728993 ~ 12751277 (+)

Expression


Co-expression Network