G24390


Basic Information

Item Value
gene id G24390
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9993562 ~ 9995992 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU28932
CATTTAATTATCTCTTTTGTGATTGTGACAAATGGGATCAAGCAAAAGAACCTAATCAGAACACATACAacattgaaatataaaaataacaaatcatttTTGCTGGTTACACTATGCAGTACTGTTCATACACAGTTCTACTGTTACATACAAGATAGATTTCTCCTCTTCAGTTATCACTTTGGTTTAGTTTAAAATGACTTCTATGTAATAAATTGTATAATTCATAAAgagtttgtttaattaaaagaaataaaaagcatggggagaaagacatgaatactttttttctttttcaaaagaGCTCACTCTACAActgtagcagaaaaaaaaaaaaatcatacttcATAATGCTTTTCTGTACAATATCTACAGAGTTGCTGGTGATGGGAAACACCCCAGGAATGAGAAAGCCAGATAAAGACTTCATAAAGGTGAGATACTACTTTCGGGGAGTCACGTGTTAGCAATGATCAGCAAACTGCCAAAATTCTGTACTGCTATAATGGCAAGAGTGCATGAGCCATCCCTCAAGCATTAAGCTTGAAGTGATTACAAttcattactttaaaaataagacGGGTATATACATAGAGAGGtgagaaaacacaacagagaaATTAAGAGACCATATATAAGGATGCTTATAAATTCAATCACATTACTAATTGCAACAAAGCAGATTCCAACAGAACATTTCATAAATTTAACAAGAATATTGGGAGTAGAGAAGACTTATCCTTGGTTTACTCCCAGAGGGAAAACCTAGGATCAAGTCTTTgacccttttttctttttttgtgaatttacaTTCATTATGCTGCCCAGTGATCAGGTTCAAACTCGTTCTGgagtaaacacacaaatacaaatatatttgtaactgcgcagaaagaaaaaaaacccaaggcatttagtaatattataataataaggcTGAAATTAAGACAGTTGGACCAATTCTATAGGATGGATGGACAGTTAGTATTGCTGAGATGCAATATCACATATACACATCATGtgtaagtttttaaaaatcacctATTGCTTTCTCTTGCAATCTTTACGGAGACATGCACTAAGTAAAAGGAGTGAATAATCAAGGATGGAAGTTATATTATCCACTCGCAGATTGGAAATTtcaggaaatttttttttaccctattGTTTTATCGTGTTTATCCCAGTCGATGCTACCAAACCTTTCTGAAAGCATGTACTGTACACCTCAAAGAGTAACAAAACAGTATTTTCCTACAGACGAGTAAACAAAGTCATCTGGATTCATCGTTATCCTCTGTGCACATTTTAAGAACAAGTAAACTAAGAGTGGGTCTATAACATGTTGAAACCAATTTATAAGTATGTGACAGGTTCTGTCTGGGAAAACAATGCAAAACTATCCTTTTCTGCTGTTTTACTCCTTTGCATCCTGAACCCCACCTAAAAGGAACCGCTTCGAACAAACTCCCAGTTGAGCTTTTGTCATCTTCAGTGCTTTGTTCCAGAAGACGGACCACTAAGGCTGGCACGGAGTCTTCAAGGAGTCTCTCCAACACAAAATAAACTGGAGCTAGCACAGCTAATCTGTATGCACAAGGCCTACTACTACTCTGTAATGTATAGCATCTAAGGGGCTTATGAACATAGCTGCCCACTCATAGATTTATCTCCCTTCCATTTGCCATATAAGTAAAAAGACTTGAACAAGAAAAGCACAACAGAGACATTATCGTCCATTTTTCACTTCTCAACCTGACAGATAGACAACTCTGCCAAGGAGCAAAGCACAAAGTTAAAAAGGCCAAAATAAAACAGGACCCAAGTAGAATTACCACGTCTCAAatgacaacagcaacaacaaaatgcAATTAGTGACCAAATAATcacatcagtaaaaaaaaaaaaaaaaaaaaaaaactcaacaactatgacaacattaataataaaacccataatatttctttaaatattagaGACTGAGAAAAGTAAATGAACTTTTTCTCTTTAGCTctctcctcattctctctcatgaaCTGACTTAACatgcagtcagtcagtcagtctctACCcaaacacacgcgcacacgcgcacacacacacacacacacacacacacacacacacttaaatgtTTGATGCTTCAGGTGCAGGGCTGCTACTTTCACGGCCTCCAGGGGCTTCCAGGCTTGCAGAGCGCTCATAGCTCTGTTTGGAGTCTCTGTCTCCACTAccggaggaagaagaggaagaaggtcCAGGAGAGGACAGTGACCGTCCCGAGATCTTATATGCAGCCAGCAGCTCCTGAATTCTCTCACTGGTTGGTTCCCATTTAGCAAAGCCGGCGTTGTTCTGCAGGAAGATGACTGCTGTTCCGTGGATGGCTTTGTAGTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28932 True 2397 lncRNA 0.40 2 9993562 9995992

Neighbor

gene id symbol gene type direction distance location
zgc:109913 LOC108271762 coding upstream 14863 9975442 ~ 9978699 (+)
LOC113536587 LOC108271763,LOC108410937,LOC107666076,LOC107740256,LOC797048,LOC107696440,LOC107587593 coding upstream 19199 9963973 ~ 9974363 (+)
mybphb mybph,LOC107696393,LOC108441582,LOC107587590,LOC107740275,LOC107744364 coding upstream 125287 9855971 ~ 9868275 (+)
nav1b nav1 coding upstream 138021 9788663 ~ 9855541 (+)
pkp1b pkp1 coding upstream 281724 9694499 ~ 9711838 (+)
pltp pltp coding downstream 15543 10011535 ~ 10025366 (+)
ncoa5 ncoa5 coding downstream 38641 10034633 ~ 10044782 (+)
nat8l2 LOC108271756 coding downstream 207582 10203574 ~ 10208434 (+)
rtf2 rtfdc1,LOC107740265,LOC107666131,LOC107744351,LOC107681290 coding downstream 293207 10289199 ~ 10315525 (+)
tfap2c tfap2c,LOC102234024 coding downstream 358319 10354311 ~ 10368017 (+)
G24354 NA non-coding upstream 38578 9868607 ~ 9954984 (+)
G24289 NA non-coding upstream 224061 9769288 ~ 9769501 (+)
G24283 NA non-coding upstream 234596 9758585 ~ 9758966 (+)
LOC113534952 NA non-coding upstream 254111 9738017 ~ 9739451 (+)
G24183 NA non-coding upstream 324171 9658633 ~ 9669391 (+)
LOC117599366 NA non-coding downstream 9545 10005537 ~ 10010607 (+)
G24463 NA non-coding downstream 147017 10143009 ~ 10143237 (+)
G24476 NA non-coding downstream 155770 10151762 ~ 10152208 (+)
G24494 NA non-coding downstream 184251 10180243 ~ 10180482 (+)
G24653 NA non-coding downstream 241894 10237886 ~ 10238122 (+)
manbal manbal other upstream 52375 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 70397 9874708 ~ 9923165 (+)
LOC113532547 LOC108271588 other upstream 390056 9591941 ~ 9603506 (+)
hmga1b NA other upstream 539100 9450925 ~ 9454462 (+)
cysltr3 LOC108271499 other upstream 988621 8996934 ~ 9004941 (+)
G24500 NA other downstream 201974 10197966 ~ 10198455 (+)
G25029 NA other downstream 910208 10906200 ~ 10908572 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other downstream 2208449 12204441 ~ 12213657 (+)
G25908 LOC108272198 other downstream 2530178 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 2733001 12728993 ~ 12751277 (+)

Expression


Co-expression Network