G24463


Basic Information

Item Value
gene id G24463
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10143009 ~ 10143237 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU29018
TTAGCTGCATTGAATGAAAATCACACTGGAATTTGATCAACATCCACTGTGATCTACTAAGCAGATAGTACAGCACACACTGCAGATTTAGTAGTATATGTCAGTGGGGAAGCAGAGTAAATCAGGCCTGAAATTACACAGAAAAGTACAGCAATACACAGTATGTCCTATTGTCGGAAAAGCTcctgtttttttagtttattgtgTAGTCGGAAGTATCAAATGgctg

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG:

id description
ko04721 Synaptic vesicle cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU29018 True 229 lncRNA 0.38 1 10143009 10143237

Neighbor

gene id symbol gene type direction distance location
ncoa5 ncoa5 coding upstream 98227 10034633 ~ 10044782 (+)
pltp pltp coding upstream 117643 10011535 ~ 10025366 (+)
zgc:109913 LOC108271762 coding upstream 164310 9975442 ~ 9978699 (+)
LOC113536587 LOC108271763,LOC108410937,LOC107666076,LOC107740256,LOC797048,LOC107696440,LOC107587593 coding upstream 168646 9963973 ~ 9974363 (+)
mybphb mybph,LOC107696393,LOC108441582,LOC107587590,LOC107740275,LOC107744364 coding upstream 274734 9855971 ~ 9868275 (+)
nat8l2 LOC108271756 coding downstream 60337 10203574 ~ 10208434 (+)
rtf2 rtfdc1,LOC107740265,LOC107666131,LOC107744351,LOC107681290 coding downstream 145962 10289199 ~ 10315525 (+)
tfap2c tfap2c,LOC102234024 coding downstream 211074 10354311 ~ 10368017 (+)
LOC113537259 NA coding downstream 611278 10754515 ~ 10754622 (+)
necab3 necab3,LOC108271560,LOC108431835,LOC107666033,LOC107744391,LOC107681272 coding downstream 791467 10934704 ~ 10974521 (+)
LOC117599366 NA non-coding upstream 132402 10005537 ~ 10010607 (+)
G24390 NA non-coding upstream 147017 9993562 ~ 9995992 (+)
G24354 NA non-coding upstream 188025 9868607 ~ 9954984 (+)
G24289 NA non-coding upstream 373508 9769288 ~ 9769501 (+)
G24283 NA non-coding upstream 384043 9758585 ~ 9758966 (+)
G24476 NA non-coding downstream 8525 10151762 ~ 10152208 (+)
G24494 NA non-coding downstream 37006 10180243 ~ 10180482 (+)
G24653 NA non-coding downstream 94649 10237886 ~ 10238122 (+)
G24658 eya2 non-coding downstream 103707 10246944 ~ 10247377 (+)
G24668 NA non-coding downstream 175381 10318618 ~ 10318829 (+)
manbal manbal other upstream 201822 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 219844 9874708 ~ 9923165 (+)
LOC113532547 LOC108271588 other upstream 539503 9591941 ~ 9603506 (+)
hmga1b NA other upstream 688547 9450925 ~ 9454462 (+)
cysltr3 LOC108271499 other upstream 1138068 8996934 ~ 9004941 (+)
G24500 NA other downstream 54729 10197966 ~ 10198455 (+)
G25029 NA other downstream 762963 10906200 ~ 10908572 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other downstream 2061204 12204441 ~ 12213657 (+)
G25908 LOC108272198 other downstream 2382933 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 2585756 12728993 ~ 12751277 (+)

Expression


Co-expression Network