G24500


Basic Information

Item Value
gene id G24500
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10197966 ~ 10198455 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU29055
TTTGAAATGCAGCACACGTACAGCAGCACACGCACTAATAAGCGGACAGGGCATGAAGGCGGCTTTGCTGCTTTGCGCGCTCACAGGTGGGTTATAACACTCCACATCCTACCTCTCAGCGGCTCCTCTGCGAGATCGGAGGCGCCTTCTTTGTCCGAGGGGCTCGGATTGGGCTCGTCCCCTTCGAACAGCTGGTTGATTTCTCCCAGCTCGCCGTCACTCCTGGATGAAGCGCTCACTGTGAACCTCTGGCTCATGGTGCTGAGGCGCCGCTCGGTGCTGGAATTCGCCGCGGATGCAGATGTTGGCGATCGGCCACCCACAGCTGCGCACCGACAGCCGAAACCACGAACTTACTGTAGATGCAAACAGAGATGATCATTCACTGGACTAAACCCATCgattcttgcttttttttttgtccccccAGTCTGCAGCTCTCAGACTTGGTATTGTTCGTTGTATGAGATCTTGAATGAGTTGCAAGCTG

Function

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU29055 True 490 TUCP 0.55 1 10197966 10198455

Neighbor

gene id symbol gene type direction distance location
ncoa5 ncoa5 coding upstream 153184 10034633 ~ 10044782 (+)
pltp pltp coding upstream 172600 10011535 ~ 10025366 (+)
zgc:109913 LOC108271762 coding upstream 219267 9975442 ~ 9978699 (+)
LOC113536587 LOC108271763,LOC108410937,LOC107666076,LOC107740256,LOC797048,LOC107696440,LOC107587593 coding upstream 223603 9963973 ~ 9974363 (+)
mybphb mybph,LOC107696393,LOC108441582,LOC107587590,LOC107740275,LOC107744364 coding upstream 329691 9855971 ~ 9868275 (+)
nat8l2 LOC108271756 coding downstream 5119 10203574 ~ 10208434 (+)
rtf2 rtfdc1,LOC107740265,LOC107666131,LOC107744351,LOC107681290 coding downstream 90744 10289199 ~ 10315525 (+)
tfap2c tfap2c,LOC102234024 coding downstream 155856 10354311 ~ 10368017 (+)
LOC113537259 NA coding downstream 556060 10754515 ~ 10754622 (+)
necab3 necab3,LOC108271560,LOC108431835,LOC107666033,LOC107744391,LOC107681272 coding downstream 736249 10934704 ~ 10974521 (+)
G24494 NA non-coding upstream 17484 10180243 ~ 10180482 (+)
G24476 NA non-coding upstream 45758 10151762 ~ 10152208 (+)
G24463 NA non-coding upstream 54729 10143009 ~ 10143237 (+)
LOC117599366 NA non-coding upstream 187359 10005537 ~ 10010607 (+)
G24390 NA non-coding upstream 201974 9993562 ~ 9995992 (+)
G24653 NA non-coding downstream 39431 10237886 ~ 10238122 (+)
G24658 eya2 non-coding downstream 48489 10246944 ~ 10247377 (+)
G24668 NA non-coding downstream 120163 10318618 ~ 10318829 (+)
G24670 NA non-coding downstream 122076 10320531 ~ 10320796 (+)
LOC113534804 NA non-coding downstream 182946 10381401 ~ 10395544 (+)
manbal manbal other upstream 256779 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 274801 9874708 ~ 9923165 (+)
LOC113532547 LOC108271588 other upstream 594460 9591941 ~ 9603506 (+)
hmga1b NA other upstream 743504 9450925 ~ 9454462 (+)
cysltr3 LOC108271499 other upstream 1193025 8996934 ~ 9004941 (+)
G25029 NA other downstream 707745 10906200 ~ 10908572 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other downstream 2005986 12204441 ~ 12213657 (+)
G25908 LOC108272198 other downstream 2327715 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 2530538 12728993 ~ 12751277 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 3067333 13265788 ~ 13332177 (+)

Expression


Co-expression Network