G24653


Basic Information

Item Value
gene id G24653
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10237886 ~ 10238122 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU29231
ggcgtttccacccacagaactgtcactcacgcAATGTTTTTCGTTTTTCTCactattctgtataaactctagagactgttgtgtgtgaaaatcccaggacatcagcagtttctgaaatactcaaaccagcccatctggtaccaacaaccatgccacagttaaagtcacagagatcaccctttttccccattctgatgtttgatgtgaacattaactgaagctcttgacctgtatgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU29231 True 237 lncRNA 0.43 1 10237886 10238122

Neighbor

gene id symbol gene type direction distance location
nat8l2 LOC108271756 coding upstream 29452 10203574 ~ 10208434 (+)
ncoa5 ncoa5 coding upstream 193104 10034633 ~ 10044782 (+)
pltp pltp coding upstream 212520 10011535 ~ 10025366 (+)
zgc:109913 LOC108271762 coding upstream 259187 9975442 ~ 9978699 (+)
LOC113536587 LOC108271763,LOC108410937,LOC107666076,LOC107740256,LOC797048,LOC107696440,LOC107587593 coding upstream 263523 9963973 ~ 9974363 (+)
rtf2 rtfdc1,LOC107740265,LOC107666131,LOC107744351,LOC107681290 coding downstream 51077 10289199 ~ 10315525 (+)
tfap2c tfap2c,LOC102234024 coding downstream 116189 10354311 ~ 10368017 (+)
LOC113537259 NA coding downstream 516393 10754515 ~ 10754622 (+)
necab3 necab3,LOC108271560,LOC108431835,LOC107666033,LOC107744391,LOC107681272 coding downstream 696582 10934704 ~ 10974521 (+)
snta1 snta1,LOC107681301,LOC107587638 coding downstream 790186 11028308 ~ 11058982 (+)
G24494 NA non-coding upstream 57404 10180243 ~ 10180482 (+)
G24476 NA non-coding upstream 85678 10151762 ~ 10152208 (+)
G24463 NA non-coding upstream 94649 10143009 ~ 10143237 (+)
LOC117599366 NA non-coding upstream 227279 10005537 ~ 10010607 (+)
G24390 NA non-coding upstream 241894 9993562 ~ 9995992 (+)
G24658 eya2 non-coding downstream 8822 10246944 ~ 10247377 (+)
G24668 NA non-coding downstream 80496 10318618 ~ 10318829 (+)
G24670 NA non-coding downstream 82409 10320531 ~ 10320796 (+)
LOC113534804 NA non-coding downstream 143279 10381401 ~ 10395544 (+)
G24751 NA non-coding downstream 214127 10452249 ~ 10452762 (+)
G24500 NA other upstream 39431 10197966 ~ 10198455 (+)
manbal manbal other upstream 296699 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 314721 9874708 ~ 9923165 (+)
LOC113532547 LOC108271588 other upstream 634380 9591941 ~ 9603506 (+)
hmga1b NA other upstream 783424 9450925 ~ 9454462 (+)
G25029 NA other downstream 668078 10906200 ~ 10908572 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other downstream 1966319 12204441 ~ 12213657 (+)
G25908 LOC108272198 other downstream 2288048 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 2490871 12728993 ~ 12751277 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 3027666 13265788 ~ 13332177 (+)

Expression


Co-expression Network