G25029


Basic Information

Item Value
gene id G25029
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10906200 ~ 10908572 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU29627
ttttaaaacaagacGCCAAAtagacactttattttaaaataaagaaaaatacaaaaaacaaaaccatttgAAACTATACAAGAGCCCAGAGCTGTGAACAGAAAAGGTTCATAACACATTCTCTTCCAGTGTGGCGAATCAAGGTCTTGGGGGACGCATGCCTGGAGGAGGAGGCCCTCTCATTCCTGGTGGTGGAGGTCTCATGCCTGGAGGAGGCATGCCCATGGGGGCACCGCGGCCTGGTGGCATGCCCATTGGGGGGCCCATCGGTGGCCTCATGCCTGGGGGAGGACCCATCATGCCTGGAGGTGGTGCACCTCTGCCCATGGGAGGAGGAGGGCCACCTCGGCCTGGTGGATATTGTGTGGGTGCACCGGCGATGCTAGCACCAGCCGCTGCTGCAGCCACTGTGCCTCTACCCTGAGGGGTCATCACCTGGAAGGAGGTGCAAGCGAACAGCCGTGAGCATCACCAGGAGCTAAAACCTCATATAATGGCAACCAAAGCCAATCTGGTTGACCTTAAGTCAACATAAGTCAATAGTCAATCATTCTAGTAACTGTTAGCTGAAACTATGTCTTAAAGTCAGTACCCAAAACAGACTGTTCCCTCAAAACACGCCTCGAACACACATGTGCTGCCTAAGCTAGAAGAGGAAGCTGATATTCAGGTGTGGTGTAGAAACTAAAGCACCTATTATAATCACAGAAAGCAAAGGACTAGTAACTCACCTGTTGTGATGGGCCCCCGACTCCTCTCACTGGTCCAGCAAGTCCAGCAGGAGCCTGTGCCATGGGAGCTCCAGCTGGTACACCTCTGCCTGCTGCTCTGCCCACACCTGGGCCTCCTGCCACCCCAGCCAGGGGCACTCTGGCAATGCCAGTCTATAACAGAAGCCAGAGTTTAGACTTGCAAATGTGAATGCATACGATTACAAAACCAAGCATGGTGAGATGGTTGTCTAACTTACATCTTTGGGAGGTGGTCCTTCAACAGTCATGGAGACCAGATTCTCTCCTCTGAGTAACACCAAACCCAACACTCgcttctcctccctctctggcTGCTTGGAATTTTTAGGCCTGCGAAACATAATAGGGAGCAGCTACATTTAAAGCATTCAGCAGACATGTCATGTCACAATATGAAATTTTCACAGTATGATAACCTActataaaaatatcacatcttGATCTAAACAAACAAGCTGGTGGTGGAAACtacacaaaaaatgtattttcaggATCTTTGTGCAAAAGCCTCTTTAATACAGCTTTGtataacaaaaaaagttttttttttttttttagaatgacTTTCACAAAATCTCTTACTGTGTAAATACTGTGAAAGTCATAAGCTGAAAGAGCATTGCAACGAAAGGTGTTACAGAaggctttcaaaaaaaaaagggggcaaTTGTTGCATTTAGTTCTGGTCAGCAATGCCAAGGTGATGACTGTCTTGTATAGTAAAGTATCAACATGATCAGAGAGGTAGCAATGCACCTCTTTAGAACAGCGGCAGATTACACAGCCAAAGAGTTTACAGTGCAGACCCATCCCCTGTGTGCAGAATCATTGGTGGCTATATGATGATTTGGGTGAATGGAGgggactgaaagaaaaaaaaaatctatcctGTATTTCTGGGGGTGTTGCAGCCGGGCATAAAAGGAAtgagaaccactggagtaaGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU29627 True 1700 TUCP 0.46 3 10906200 10908572

Neighbor

gene id symbol gene type direction distance location
LOC113537259 NA coding upstream 151578 10754515 ~ 10754622 (+)
tfap2c tfap2c,LOC102234024 coding upstream 538183 10354311 ~ 10368017 (+)
rtf2 rtfdc1,LOC107740265,LOC107666131,LOC107744351,LOC107681290 coding upstream 590675 10289199 ~ 10315525 (+)
nat8l2 LOC108271756 coding upstream 697766 10203574 ~ 10208434 (+)
ncoa5 ncoa5 coding upstream 861418 10034633 ~ 10044782 (+)
necab3 necab3,LOC108271560,LOC108431835,LOC107666033,LOC107744391,LOC107681272 coding downstream 26132 10934704 ~ 10974521 (+)
snta1 snta1,LOC107681301,LOC107587638 coding downstream 119736 11028308 ~ 11058982 (+)
ralgapb ralgapb,LOC107681280 coding downstream 304773 11213345 ~ 11252653 (+)
LOC113533429 kcnq2,LOC107681271,LOC100537363 coding downstream 354558 11263130 ~ 11312925 (+)
arfrp1 arfrp1,LOC102305184 coding downstream 414198 11322770 ~ 11327587 (+)
G24989 NA non-coding upstream 59075 10821467 ~ 10847125 (+)
G24759 NA non-coding upstream 415912 10489288 ~ 10490288 (+)
G24751 NA non-coding upstream 453438 10452249 ~ 10452762 (+)
LOC113534804 NA non-coding upstream 510656 10381401 ~ 10395544 (+)
G24670 NA non-coding upstream 585404 10320531 ~ 10320796 (+)
G25035 NA non-coding downstream 7484 10916056 ~ 10918504 (+)
G25110 NA non-coding downstream 325550 11234122 ~ 11234603 (+)
LOC117598838 NA non-coding downstream 416838 11325410 ~ 11327031 (+)
G25344 NA non-coding downstream 518827 11427399 ~ 11427789 (+)
G25355 NA non-coding downstream 533915 11442487 ~ 11444101 (+)
G24500 NA other upstream 707745 10197966 ~ 10198455 (+)
manbal manbal other upstream 965013 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 983035 9874708 ~ 9923165 (+)
LOC113532547 LOC108271588 other upstream 1302694 9591941 ~ 9603506 (+)
hmga1b NA other upstream 1451738 9450925 ~ 9454462 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other downstream 1295869 12204441 ~ 12213657 (+)
G25908 LOC108272198 other downstream 1617598 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 1820421 12728993 ~ 12751277 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 2357216 13265788 ~ 13332177 (+)
tshba tshb,LOC108271948 other downstream 2581589 13490161 ~ 13506004 (+)

Expression


Co-expression Network