Gene
RNA
| Item | Value |
|---|---|
| gene id | G25372 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 11460261 ~ 11460471 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU30014 | True | 211 | lncRNA | 0.48 | 1 | 11460261 | 11460471 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117595871 | NA | coding | upstream | 4171 | 11452072 ~ 11456090 (+) |
| igsf8 | igsf8,LOC108431823 | coding | upstream | 40821 | 11408776 ~ 11419440 (+) |
| sp7 | sp7 | coding | upstream | 102608 | 11353572 ~ 11357653 (+) |
| stmn3 | stmn3 | coding | upstream | 124763 | 11330363 ~ 11335498 (+) |
| arfrp1 | arfrp1,LOC102305184 | coding | upstream | 132674 | 11322770 ~ 11327587 (+) |
| dctn2 | dctn2,LOC107558166 | coding | downstream | 26266 | 11486737 ~ 11500516 (+) |
| ddit3 | ddit3 | coding | downstream | 57023 | 11517494 ~ 11520910 (+) |
| arhgap9 | arhgap9 | coding | downstream | 75858 | 11536329 ~ 11579131 (+) |
| LOC113526407 | r3hdm2 | coding | downstream | 235160 | 11695631 ~ 11753218 (+) |
| LOC113534407 | stac3 | coding | downstream | 294092 | 11754563 ~ 11760603 (+) |
| G25371 | NA | non-coding | upstream | 2257 | 11457778 ~ 11458004 (+) |
| G25357 | kif5a,kif5ab,LOC106566150,LOC107558152,LOC107681593,LOC106582664 | non-coding | upstream | 14825 | 11445124 ~ 11445436 (+) |
| G25356 | NA | non-coding | upstream | 15677 | 11444167 ~ 11444584 (+) |
| G25355 | NA | non-coding | upstream | 16160 | 11442487 ~ 11444101 (+) |
| G25344 | NA | non-coding | upstream | 32472 | 11427399 ~ 11427789 (+) |
| G25374 | NA | non-coding | downstream | 651 | 11461122 ~ 11461345 (+) |
| G25387 | NA | non-coding | downstream | 24330 | 11484801 ~ 11485366 (+) |
| G25408 | NA | non-coding | downstream | 119267 | 11579738 ~ 11580030 (+) |
| G25410 | NA | non-coding | downstream | 124936 | 11585407 ~ 11585643 (+) |
| G25422 | gli1 | non-coding | downstream | 158698 | 11619169 ~ 11623069 (+) |
| G25029 | NA | other | upstream | 551689 | 10906200 ~ 10908572 (+) |
| G24500 | NA | other | upstream | 1261806 | 10197966 ~ 10198455 (+) |
| manbal | manbal | other | upstream | 1519074 | 9938365 ~ 9941187 (+) |
| LOC113530691 | LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 | other | upstream | 1537096 | 9874708 ~ 9923165 (+) |
| LOC113532547 | LOC108271588 | other | upstream | 1856755 | 9591941 ~ 9603506 (+) |
| si:dkeyp-67f1.2 | fam3d,LOC108272267 | other | downstream | 743970 | 12204441 ~ 12213657 (+) |
| G25908 | LOC108272198 | other | downstream | 1065699 | 12526170 ~ 12527491 (+) |
| si:ch211-286o17.1 | NA | other | downstream | 1268522 | 12728993 ~ 12751277 (+) |
| si:dkey-238f9.1 | si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 | other | downstream | 1805317 | 13265788 ~ 13332177 (+) |
| tshba | tshb,LOC108271948 | other | downstream | 2029690 | 13490161 ~ 13506004 (+) |
