G25624 (LOC108271795)


Basic Information

Item Value
gene id G25624
gene name LOC108271795
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11946093 ~ 12038014 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU30282
aaaaaaaaaaaaaaaaaggccacccACCGTGTCAGCGAGCCGAGCGAGGAGAGCTTTTAGACATGAGGAAGATGGGATTATGATCTCAGCCGCACAGTGCTGCCACAGAGGGCCTTCTTCTCAGGCAAAACCCACAGATGGCAACTGCAGAAGAGATTTCGATGAAGGCTTTTTAAACTTATCTTGCTGCAAATAAAACATGTACTTAAAAGACTCAAGTTTCAACCAGATTCTTCCCAATGCAAGACTTTAAAAACAAGCTTTCTGTGACCACAGATTAAACTGCATGCATTTTTAAGAATCCAGTTGAAACATTTTCTCCCTACCCCAAATTAACCAATACAGCATAAAGAGGGGGGAAAAGTAAATTACAAAGATGATGTTTGTGTAACACTACCTGTTTTAAACTTTAATCTCATTTAATATCTTGTTCAAATGTAGAAAAACATTCTGGTCTCCCCAAACTCCCCATTTGCTCCTGCTCCCACTCCCGCAATGCACAAAAAGAGTTAAGTCTCTCAGAAAATACttaccaaacacacactaaaaatatCAACACTTCAAAAACAAACCCCACCACTTACATCCCCCACCCCGTAGACTTCGACTCCATACTGGAGCCGAAGCTCGAGTTAAACCCACTTCCGCTGCTAGCGGCGTTAGAGCCTGCGCCCCAGCCGAGTGCagctgagctgctgctgtagttGCTGTTTCCTGTGCTGTACTGCGTCTGGTCTCGAGCGGAGCTAGCGCCGCTCGCGCTTGAGCCAGACGTAGCTGACTGACCCTGCTGCGCCAACATTCCCATCATTCCCCAGCTACTCTGCAGGGCAGCCTGAGCGGCGGCCATCATGGCCGGGTTCAGGTTGAAGTTGCTGAAGTTTCCCAGGCTGCTGGAGCTGCTGCGGCTGCTCCCAAAAGCCTGCGCGCCGAAACCATTTCCGTAGCGGACCCGATCCATCATGTGCCCTCTGCCACTGTGCTTGGGTTCAGCGTTGGATATATGAACACTCACTCCCTTGATGATTAGATCCTCTCCACACAGGGAAGCGGCAATCTGTGCAAGGGAGATGGA

Function

NR:

description
PREDICTED: TAR DNA-binding protein 43-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30282 True 1075 lncRNA 0.44 2 11946093 12038014

Neighbor

gene id symbol gene type direction distance location
shmt2 shmt2,LOC107758195,LOC103359782 coding upstream 8530 11902218 ~ 11937563 (+)
LOC113547077 nxph4,LOC107556734,LOC107758187,LOC107676147,LOC107735585 coding upstream 53353 11832707 ~ 11892740 (+)
LOC113534407 stac3 coding upstream 185490 11754563 ~ 11760603 (+)
LOC113526407 r3hdm2 coding upstream 192875 11695631 ~ 11753218 (+)
arhgap9 arhgap9 coding upstream 366962 11536329 ~ 11579131 (+)
cfap20dc c11h3orf67 coding downstream 145033 12183047 ~ 12203172 (+)
pbrm1l LOC108271990,LOC108427561,LOC107667000,LOC107713535 coding downstream 208637 12246651 ~ 12259190 (+)
stau1 stau1 coding downstream 222308 12260322 ~ 12269807 (+)
LOC113533827 LOC108271551 coding downstream 326111 12364125 ~ 12385687 (+)
LOC113533905 LOC108271551 coding downstream 356051 12394065 ~ 12402681 (+)
LOC113534932 NA non-coding upstream 140634 11803590 ~ 11805459 (+)
G25452 NA non-coding upstream 153968 11732424 ~ 11792125 (+)
LOC117599151 NA non-coding upstream 257869 11668819 ~ 11688224 (+)
G25434 NA non-coding upstream 282999 11662230 ~ 11663094 (+)
G25422 gli1 non-coding upstream 323024 11619169 ~ 11623069 (+)
G25872 NA non-coding downstream 236838 12274852 ~ 12275052 (+)
G25882 NA non-coding downstream 254909 12292923 ~ 12293129 (+)
G25886 NA non-coding downstream 257597 12295611 ~ 12296042 (+)
LOC117599716 NA non-coding downstream 264910 12302924 ~ 12309500 (+)
G25907 NA non-coding downstream 370307 12408321 ~ 12408523 (+)
G25029 NA other upstream 1037521 10906200 ~ 10908572 (+)
G24500 NA other upstream 1747638 10197966 ~ 10198455 (+)
manbal manbal other upstream 2004906 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 2022928 9874708 ~ 9923165 (+)
LOC113532547 LOC108271588 other upstream 2342587 9591941 ~ 9603506 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other downstream 166427 12204441 ~ 12213657 (+)
G25908 LOC108272198 other downstream 488156 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 690979 12728993 ~ 12751277 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 1227774 13265788 ~ 13332177 (+)
tshba tshb,LOC108271948 other downstream 1452147 13490161 ~ 13506004 (+)

Expression


Co-expression Network