G25908 (LOC108272198)


Basic Information

Item Value
gene id G25908
gene name LOC108272198
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12526170 ~ 12527491 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU30617
TAAAAGCTAGTGCACAAAAATTAATACATACGCAAATGTTTAATTGTACTACTTTGTAAGAGACTATACTGTTTTATACTTTTTCATGATTGAGCAGATGAGTTTGAATTACTTTTAGGATCTCTAGCAAACACAGTCTCTGATGGTGCGCTTGGTTCCCCAGGTCCAGATATGTTGACAGCAGAAACGCGAAACTCATACTCCATGCCCTCAATAACATCTTTACAAGCATACTTCTTGGCTTTTTGCGTTTTTCAAGGTTGTAACCCAGAATGTTGGTTCCTCCAGTGGTGGATGGAGGGGTCCATGACAAGGTGATGCAGTCCTTGAAGGCACTGATCACTTTAGGAGCAGACGGTGGGCCAAGATATGCTGAAAAAGTGAATAATGTTACTTATGCCTCCTATATTTTTATGCGTGAAAGGGATTTTAACTTCAGAGATTTTTATTGCCAAAGGAAATGAAAGTCTCACATTTAGTCCCAGCTTGAACGTCTTCTGTCTCGAATACCTCGCTGATACCCTCCGAGGTCTCAGCTCTGATGCGGTAGCAGTACCTTTTACCATGATCCACATCAGTGTCTCTGTAATGGGCTTCCCCAGGAATCTGTCCAATCTTCTTCCAGGTGTTGCGTCCAACTTGATTACGCTCAAGGATATAATGAGTGATTGGGCAGCCCCCGCCGTCTTTTGGTGGGCGCCATTTGATCTCAATGCAGTTTGAGGAAGCTTCCACTATCTCAAGAGGTCCAAGAGGTGGAGTAGGTTTATCTATTAGACATCAAGACCATCAAGACAATATATTAGATCTAAATGCATAACAAAATTATATCTAGTACCAGAAACCTTCATTTGATTAGCTTACCAAGTACAACTAGATTAGTAGTTGCTTCAACAGTGCCaaactcattttttattttgattttaatttctCCTGTGTCTTTGCGCTGTAGTTTGTTGAGAGACAAACGGCATTGGCTTTCAGTAGTATCAATCCTACAGTTTGCATCTCTTGTAAGTTCTTCGCCTTCTTTATACCATTGTATTTTAGTGGCCTCACTGCCAATATATGGTATTTTGAAGTCAGCTTTATGATTAGCTTTTACCACTCTTGGTTTGACAAATTCTTCAAGGTCTTTAGTATTGAATCTTGGTGGATC

Function

NR:

description
PREDICTED: immunoglobulin-like and fibronectin type III domain-containing protein 1 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30617 True 1159 TUCP 0.52 2 12526170 12527491

Neighbor

gene id symbol gene type direction distance location
tespa1 tespa1,LOC107549312 coding upstream 94033 12422155 ~ 12432137 (+)
LOC113533905 LOC108271551 coding upstream 123489 12394065 ~ 12402681 (+)
LOC113533827 LOC108271551 coding upstream 140483 12364125 ~ 12385687 (+)
stau1 stau1 coding upstream 256363 12260322 ~ 12269807 (+)
pbrm1l LOC108271990,LOC108427561,LOC107667000,LOC107713535 coding upstream 266980 12246651 ~ 12259190 (+)
padi2 padi2,LOC100380857 coding downstream 406167 12933658 ~ 12949604 (+)
phc2b LOC108272160,LOC108427585 coding downstream 559449 13086940 ~ 13117556 (+)
cttnbp2nla LOC108272146 coding downstream 592812 13120303 ~ 13139653 (+)
wnt2ba LOC108271793,LOC106582740,LOC107666178,LOC107729733,LOC107708099 coding downstream 619779 13147270 ~ 13156144 (+)
mov10a mov10,LOC108427590 coding downstream 672561 13200052 ~ 13214563 (+)
G25909 LOC108271616,LOC108427537,LOC107666972,LOC107708174,LOC107713484,LOC107561018 non-coding upstream 13512 12509639 ~ 12512658 (+)
G25939 NA non-coding upstream 50347 12474711 ~ 12475823 (+)
G25907 NA non-coding upstream 117647 12408321 ~ 12408523 (+)
LOC117599716 NA non-coding upstream 216670 12302924 ~ 12309500 (+)
G25886 NA non-coding upstream 230128 12295611 ~ 12296042 (+)
LOC117595882 NA non-coding downstream 231008 12758499 ~ 12762286 (+)
G26229 NA non-coding downstream 267597 12795088 ~ 12795301 (+)
G26231 NA non-coding downstream 270205 12797696 ~ 12798029 (+)
G26233 NA non-coding downstream 272127 12799618 ~ 12799854 (+)
G26266 NA non-coding downstream 327905 12855396 ~ 12908094 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 312513 12204441 ~ 12213657 (+)
G25029 NA other upstream 1617598 10906200 ~ 10908572 (+)
G24500 NA other upstream 2327715 10197966 ~ 10198455 (+)
manbal manbal other upstream 2584983 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 2603005 9874708 ~ 9923165 (+)
si:ch211-286o17.1 NA other downstream 201502 12728993 ~ 12751277 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 738297 13265788 ~ 13332177 (+)
tshba tshb,LOC108271948 other downstream 962670 13490161 ~ 13506004 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 2751331 15278822 ~ 15304494 (+)
LOC113534559 LOC108272085 other downstream 3261135 15788626 ~ 15790444 (+)

Expression


Co-expression Network