G25909 (LOC108271616,LOC108427537,LOC107666972,LOC107708174,LOC107713484,LOC107561018)


Basic Information

Item Value
gene id G25909
gene name LOC108271616,LOC108427537,LOC107666972,LOC107708174,LOC107713484,LOC107561018
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12509639 ~ 12512658 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU30618
CTAAGACTATGAGCTTGGAGAAAGCCTCAGTAGTCCCAAATTCATTCTTCAGCTTGAACTTGATCTCTCCTGTATCTTTGCGCTGGCACTTGGTGAGGAGTAGGCAGCTGTGGCTGGAGGACTTCTCAATCTTGACATTAATGTCATCTAGCAGTTCCTCACCTTCATGGTACCACTGCACCTTTATTGGCTCTCGACCCACAAAGCTCAGTTTGAAGGTGGCATTTTGGCCAACCTTGATGATCACTGGCTGTGAGAACTTAGTTAGATCATCTTGATTCATCCTTGGTGGGTTTCCACAATGAGCAGAGCCTCTGTTTTAcgcccatctgcctcaaagcGATACTTTCCATTGTCATCCTCCGTACAATTATTAATCACCAGTTTGTGCACCGCTCCATCTTTGATGATCATCAGGTCATCTGTAGATTTTATCTGTGTAGACACTATAGTGACTTTTGGAGCACAGTGATTCTTTCCAAGAAGTTACTGCATCTCTTGCTCATGACCTACATGAGCTGAGTGTGTAGGCATACCTACCTGTTTTCCATCTTTATACCACACTCCATCATAGTTCGCATCGCTTATCTTGCACACCATCTCAGCTGAATGGCCCACAATGGCTTTGACATCTTGTAACCCGCTAGTGAAGTAAACGCCTTGGGCTGGATAAGAGATTACTTGTCTGAAAGCTTGGtctatcacatttttttaatgtgaattaCAATAAGAAAGTACATTGTAGATAAGTGTATTAGACCAGCAcatctttattatttacaccTCCGGTAGCTTATATGCATTACATACTTTATATCTATGTATACTATACgaaaaacacacagctgggATTGTGTATCAGTGAATCACATTGagtcaaaatgttaaaatatttgctttataCATGCTGATGCTTTGCAGATGACATACCAATTACAGTATCAGGGATCAATGGCCCTGTCCTGACTCTTTTattcttctcctctcctttctccTCACTGATTTGCTCTGAATGTTGTTCACATTCCACTGCTTGTCCAGATCCATCACGCTTATTCTCTGTTTTCTGAAGTACTTCCTCCCCCTCTGACTCTTCTTCCTTTGGCTCTTCTATCATACTTTCAGAGACAGACGTGGGCTTAGCTTTAGGCTTGGTTTTAGGTTTGTCTTTGGGATTCTGGGATGTCTGTAGGATTAGCTCAGCTGGAGACTGTGCTAGAGGGTTAAGAAGATCCTCGACTGAAAGCTCAACAGGAGACTCAGCCTCATTGTCTGGGGTCTCTGCAGCCTGATCAACCTGATGTTGTTTGAGCAttgcttttctctcctctctctccttctgtaaCTTGGCTTGCTGCTCAGCTGCAATCTTTGCCAAATCAGTTCTGCTACCTCCGGCCTGGGTTGTTTTGCGTGCTGCTTTTTTTCCACGCTTGTCTGAGTCATTGTCAGCTGTTCCAAAAGACAGACATATACAGACATGTCAATATGCTAGATAGGGATTAAAAAAACTCCATGGCAACATCATAGAAGTAGATTCTTTAATCAGTTATTCATAAAAACTAATAATTCAAGTAAAAACTATAGAAATTTCACTGTGAATATATAGATCAAATTATACTCTGCTACTCTTTTCTAGAGTACTAATTTCCCAGCAGGTCTACTGATAAAGATGTGTATCTTTCAGTTTAACTAAACACATACAGAGGCttgcattattattaagtagtCACCTCCCTtgaattttttcacattttgtagtgttacaacttgGAATTGAAATTAACTGAATTGGAATTTGTTTGATTTGGTCTTCATactgctgtttgtttagatatgttctctaacaaactttTGGGCTGTACCAaaccaggaacaggtgtatttatattgatattATGTGACACTTTGCTTGCACAACTAATTACTTGACTTCAGATGGCAacattttacataagtgtgtaaataatttcatttccctcctcctcttcaATATTGTGAGTTATTTTATGTCAATCCAtgaaattacattaatttcagttccaggttgaaATGGATAATAGGCAGAAAACTGagtacttatgcaagccactgtaatGATCCTCATTTATGCACAAAAATCTTTAAGCTGTTGTTAACTAACTAGCAAATGGTCAAATATGCACCTACCTTCCACTAACAGCCAGGCATTGCAAGATTTGATTCCAGCCACAGCAGCATATATGCCTTTATCCACCAGCATACAATCTTTCACCACCAATCTATGGATCAGCATATCCTCAGACACAGTAATGTCATATTTCTCGCCTTGAACCAATGCAACACTCTTTCCCATCCATGTGATCTTTGGGAGTGGTGCAGACAGAACACACTCAAAGACTGCATCCTCTCTTTCAGTTGCTGTAACCTCTGTAATCTTTACCAAGAAGTCCACATTTGGAAtttaaatctgtagaAAAGATATTAACTCCTTCAACGTCTACTTGGTAGAGTCCGGCATCATCTGGAGACAGTCCACTGACAGTGAAGATGAACCGTCTGCCAATTTGACGCAGACTGTGCTTCTCACTTGTGTCAGGGGTAAATTCAACCAGTTCACCATCCTGTAGCACCAACAATGCAGAATATTTAACTAATGCCTATGCTTGGTTCTTGTTTATCTATCTAGGTGTGAGATTTCAATATCAGAAAACTTTGATTAGTGTCTTACTTTATAGAGGAAGATTT

Function

NR:

description
PREDICTED: immunoglobulin-like and fibronectin type III domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30618 True 2727 lncRNA 0.40 4 12509639 12512658

Neighbor

gene id symbol gene type direction distance location
tespa1 tespa1,LOC107549312 coding upstream 77502 12422155 ~ 12432137 (+)
LOC113533905 LOC108271551 coding upstream 106958 12394065 ~ 12402681 (+)
LOC113533827 LOC108271551 coding upstream 123952 12364125 ~ 12385687 (+)
stau1 stau1 coding upstream 239832 12260322 ~ 12269807 (+)
pbrm1l LOC108271990,LOC108427561,LOC107667000,LOC107713535 coding upstream 250449 12246651 ~ 12259190 (+)
padi2 padi2,LOC100380857 coding downstream 421000 12933658 ~ 12949604 (+)
phc2b LOC108272160,LOC108427585 coding downstream 574282 13086940 ~ 13117556 (+)
cttnbp2nla LOC108272146 coding downstream 607645 13120303 ~ 13139653 (+)
wnt2ba LOC108271793,LOC106582740,LOC107666178,LOC107729733,LOC107708099 coding downstream 634612 13147270 ~ 13156144 (+)
mov10a mov10,LOC108427590 coding downstream 687394 13200052 ~ 13214563 (+)
G25939 NA non-coding upstream 33816 12474711 ~ 12475823 (+)
G25907 NA non-coding upstream 101116 12408321 ~ 12408523 (+)
LOC117599716 NA non-coding upstream 200139 12302924 ~ 12309500 (+)
G25886 NA non-coding upstream 213597 12295611 ~ 12296042 (+)
G25882 NA non-coding upstream 216510 12292923 ~ 12293129 (+)
LOC117595882 NA non-coding downstream 245841 12758499 ~ 12762286 (+)
G26229 NA non-coding downstream 282430 12795088 ~ 12795301 (+)
G26231 NA non-coding downstream 285038 12797696 ~ 12798029 (+)
G26233 NA non-coding downstream 286960 12799618 ~ 12799854 (+)
G26266 NA non-coding downstream 342738 12855396 ~ 12908094 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 295982 12204441 ~ 12213657 (+)
G25029 NA other upstream 1601067 10906200 ~ 10908572 (+)
G24500 NA other upstream 2311184 10197966 ~ 10198455 (+)
manbal manbal other upstream 2568452 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 2586474 9874708 ~ 9923165 (+)
G25908 LOC108272198 other downstream 13512 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 216335 12728993 ~ 12751277 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 753130 13265788 ~ 13332177 (+)
tshba tshb,LOC108271948 other downstream 977503 13490161 ~ 13506004 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 2766164 15278822 ~ 15304494 (+)

Expression


Co-expression Network