G26233


Basic Information

Item Value
gene id G26233
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12799618 ~ 12799854 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU30985
CTTCACTTGCATACCTCTCTGTCCAGACTCCTGTGCAGTGCCTTTGAGCTTGCTCTGGCGGAGGGTGACATCTCGTCTCGGAGAGCTACTGGGTAACGTGCTTGAATAATATGTGAGGGCTTGGGGGGCTCCGACATCATGGCATTGGTCCAAAGTCTCAAGGCTGGCACTTATTTCCTGTCTCTACAGGGCACAATTAGAAAGTGCATGCTTTTAAGGCAAGTTTTCAACTTTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30985 True 237 lncRNA 0.50 1 12799618 12799854

Neighbor

gene id symbol gene type direction distance location
tespa1 tespa1,LOC107549312 coding upstream 367481 12422155 ~ 12432137 (+)
LOC113533905 LOC108271551 coding upstream 396937 12394065 ~ 12402681 (+)
LOC113533827 LOC108271551 coding upstream 413931 12364125 ~ 12385687 (+)
stau1 stau1 coding upstream 529811 12260322 ~ 12269807 (+)
pbrm1l LOC108271990,LOC108427561,LOC107667000,LOC107713535 coding upstream 540428 12246651 ~ 12259190 (+)
padi2 padi2,LOC100380857 coding downstream 133804 12933658 ~ 12949604 (+)
phc2b LOC108272160,LOC108427585 coding downstream 287086 13086940 ~ 13117556 (+)
cttnbp2nla LOC108272146 coding downstream 320449 13120303 ~ 13139653 (+)
wnt2ba LOC108271793,LOC106582740,LOC107666178,LOC107729733,LOC107708099 coding downstream 347416 13147270 ~ 13156144 (+)
mov10a mov10,LOC108427590 coding downstream 400198 13200052 ~ 13214563 (+)
G26231 NA non-coding upstream 1589 12797696 ~ 12798029 (+)
G26229 NA non-coding upstream 4317 12795088 ~ 12795301 (+)
LOC117595882 NA non-coding upstream 37332 12758499 ~ 12762286 (+)
G25909 LOC108271616,LOC108427537,LOC107666972,LOC107708174,LOC107713484,LOC107561018 non-coding upstream 286960 12509639 ~ 12512658 (+)
G25939 NA non-coding upstream 323795 12474711 ~ 12475823 (+)
G26266 NA non-coding downstream 55542 12855396 ~ 12908094 (+)
LOC113533310 NA non-coding downstream 551992 13351846 ~ 13374496 (+)
G26749 NA non-coding downstream 635050 13434904 ~ 13517403 (+)
G26848 NA non-coding downstream 826627 13626481 ~ 13629466 (+)
G26873 NA non-coding downstream 1022530 13822384 ~ 13825226 (+)
si:ch211-286o17.1 NA other upstream 48341 12728993 ~ 12751277 (+)
G25908 LOC108272198 other upstream 272127 12526170 ~ 12527491 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 585961 12204441 ~ 12213657 (+)
G25029 NA other upstream 1891046 10906200 ~ 10908572 (+)
G24500 NA other upstream 2601163 10197966 ~ 10198455 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 465934 13265788 ~ 13332177 (+)
tshba tshb,LOC108271948 other downstream 690307 13490161 ~ 13506004 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 2478968 15278822 ~ 15304494 (+)
LOC113534559 LOC108272085 other downstream 2988772 15788626 ~ 15790444 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 3283435 16083289 ~ 16103248 (+)

Expression


Co-expression Network