G26749


Basic Information

Item Value
gene id G26749
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13434904 ~ 13517403 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU31569
tttttttttttttttttttttgtcctccattccactgaaatgtttttgaactACATGAGATTGTGGGCACAAGGCGATTTGGTGGCCCCAGGCCAGTAAATAGTTAATTTTTTGAAGTCTGTACTGAGTTTTGTGGACCAGTTAGTCAGTTTCCAAGAGTAATGTTGATCTACCATAATAATGGTAAATATTTCATCAcatgtgaagtaaaagaaacaaaacctcTCCTTGGTTCCTAGAAGTTCAGGGTAACATCCTCTGGATTTCCCTGAGTAAAATGAATTACTGACTAGAATCTATGTAACTGCAGTGAGTAAATAGTATATAGAATGTCATCTATCAAAAATGTGAAGGTCATAACATGTCTGTGTGGTTTACTAGATGAACAGTTGTGCTTAATACTAAAAAATGGCCCAGATGCCTAGTTACTTTTTAGTATGAACTGCATCTAGCTTGTAAACATTAAGGTTATTAAACATAGTACTCAGTGTTTTAGTACTCATTGGTTGTTACTAATCAGCATAAACCATGACATTGTTCGTGCGGTGAAACTTTTGAAATgatagcacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtgttggttCATTTTGTACTGTGATATTTGCaaaacagactttaaaataaacttgAACATGTAGCTACaagcaatgctttttttttttattaccgtttatttatttttttcaaagcagTCATAAACCATATTTAGAGATAGCTACAAAACACATGCTGTGGAACTCAttgataatttttttgtgttttaacaaCCGGCTAAACCCATACCACCATGTATTCAAAGAACAAAGCATTACCCAAGCAAGTTAGAAATGTTCTAGGAGAAATATAAACTCATGATATATACAAGGGCATATTTTTATCATTCACAGCATGCTTAGGTAGGAAAGGAAGGTGCCATACTGAATGTGTGATTAAAGGCACAGCAAGGTATCAGTTCACCCAAGTTGTGCTCGTGTGATTAAAGAACTGTGATACTATAATTGTTACCCACACAAAGCTGTGCTTAATGTTTCACTGATATAGAACTTCTGACTAACAGTATGGAGGCAGTGCTGACACATTCATGGAAGAATGCAAGGGTACTGTAGGTGGTAGTATTTAAGACATTACTATAAAGGATTGACAGTTTACAAGGGCAAGGGTTTTCACACTGCACTACAAGCAACATGTATTCCTCTCGGTTTTGGGTAAGTGTGAGTGGTATATGTTCATGCCTCACCACTCAATACTGTGCTGTTGCAGTCATCTTCGAATCATGTTTTTGCAAATATGGCAGCGTGAACATGAATCACTTACAAACCACCTAAACATTTACAAAGCATTACTCATAACCTAAACTAAACACTTTACTACAGCAAACATGGGCTACTAAATAACATTCCAAGGCATCAACAGAAAGCAAGTAGTACCTtttctatatatacagtatttacattaCCAAAGTTGTGTAATGCATAgtaggagaaggagaaaaacagaatgttGCCCAAGCTTCTCTGTTTGGTAATGTCTAAACTGATCATAAAAATCAGGCTGTAATCGTAACTGCTCTCCcagataaacaaaataatataaggTCATGTTAATTCAGTTACACTCTCAGTCCATGCAGTGGTGATTCAGCACAAAGACAtacaattaaacaaagaaacaaaagattATTATAAAGCTGCAACAATATCTTACACTATTTTATGTGAGCCTTTCAAATGTGATGGCTCAGTGAGGTCAGGACAGGGGATTCAGGACAGTTCAGCCTTAAGTAGGAGGCCTATGAGCATCTATAGGACCTCCCTGTTGCTCCGAATACCACAGCATAGAACCATACTGAAGATCATACCAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31569 True 1891 lncRNA 0.38 2 13434904 13517403

Neighbor

gene id symbol gene type direction distance location
mov10a mov10,LOC108427590 coding upstream 220341 13200052 ~ 13214563 (+)
wnt2ba LOC108271793,LOC106582740,LOC107666178,LOC107729733,LOC107708099 coding upstream 278760 13147270 ~ 13156144 (+)
cttnbp2nla LOC108272146 coding upstream 295251 13120303 ~ 13139653 (+)
phc2b LOC108272160,LOC108427585 coding upstream 317348 13086940 ~ 13117556 (+)
padi2 padi2,LOC100380857 coding upstream 485300 12933658 ~ 12949604 (+)
LOC113534455 kcna3a,LOC108271529,LOC107554199,LOC107708155,LOC107685799,LOC107729772,LOC107666172,LOC107577939,LOC105907781 coding downstream 53356 13570759 ~ 13578479 (+)
LOC113534264 LOC108271528,LOC103030675,LOC108427602,LOC107685800,LOC100537815,LOC107554174,LOC107596796,LOC107666037,LOC107729734 coding downstream 67689 13585092 ~ 13590794 (+)
LOC113537237 LOC108271567,LOC108427546,LOC107708091,LOC107596858,LOC107666053,LOC107729737,LOC107554173,LOC107685839 coding downstream 79446 13596849 ~ 13612881 (+)
LOC113541997 NA coding downstream 102921 13620324 ~ 13624171 (+)
LOC113528606 LOC108271940 coding downstream 119594 13636997 ~ 13640777 (+)
LOC113533310 NA non-coding upstream 60408 13351846 ~ 13374496 (+)
G26266 NA non-coding upstream 526810 12855396 ~ 12908094 (+)
G26233 NA non-coding upstream 635050 12799618 ~ 12799854 (+)
G26231 NA non-coding upstream 636875 12797696 ~ 12798029 (+)
G26229 NA non-coding upstream 639603 12795088 ~ 12795301 (+)
G26848 NA non-coding downstream 109078 13626481 ~ 13629466 (+)
G26873 NA non-coding downstream 304981 13822384 ~ 13825226 (+)
G26875 NA non-coding downstream 316836 13834239 ~ 13836347 (+)
G26884 NA non-coding downstream 355912 13873315 ~ 13873523 (+)
G26921 NA non-coding downstream 483528 14000931 ~ 14054690 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 102727 13265788 ~ 13332177 (+)
si:ch211-286o17.1 NA other upstream 683627 12728993 ~ 12751277 (+)
G25908 LOC108272198 other upstream 907413 12526170 ~ 12527491 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 1221247 12204441 ~ 12213657 (+)
G25029 NA other upstream 2526332 10906200 ~ 10908572 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 1761419 15278822 ~ 15304494 (+)
LOC113534559 LOC108272085 other downstream 2271223 15788626 ~ 15790444 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 2565886 16083289 ~ 16103248 (+)
mustn1a LOC108272082,LOC108439813 other downstream 2663768 16181171 ~ 16182309 (+)
tomm6 tomm6 other downstream 2880842 16398245 ~ 16401111 (+)

Expression


Co-expression Network