G27164


Basic Information

Item Value
gene id G27164
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14169780 ~ 14172077 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU32056
GGCACAGCAGGCCTCTGGATTTGTACTTGtaaatgaaaacttttattttgtaaaaatcaataaaggtgtgaatattttttttctcttttcctagTGGTAAAATGTACTTTCTAGTTGTTGAATGCACAGCAATTaagcatttaattaattaattaatgtaaaataaataaataaataaataaataaataaaacaactaaTAGTCCAAACATGAAATCTACTTGTCTTGGGTGCCTGGGCTACTGCTTTGCCCACCCCTACTTAAAATACATGTCTGTAATACCCTTACTTAAAATACATgtctgtaagaaataaaacccgTCAGCTCTGTGTAAGTCGTGTTCTCAGACAATGTAATATGCCCGTCTTATCTTTTCCATTTGCTTTTATTATCTGGTGTTTGTCACAAGTAATTTGCTTGCAAGAGTGTTTGTAGTCTAATAAATGTTGCAATACATATATGAGCAAGGCAACTGTGACAATGTAAAGTCAGGCTTACCAATCAGATCCAGTTCTATGGCTTCGCATGTCACATTCAACTCTTTAAAGAGCTCCTCACCTTTTTACAGTAGGGACAGTAGCTTTTGCTGAAAATCACAACAGGATTGGTGTCGATGAGCTCCTGTATCCGAGCTTTAATTGGATCGTTCTCGGTCTCTACCGGCGGCATGATTAGACCGGAAAATGCCGCGCGCGTTACTGCGGATCAGAGGGAGCTAAATTACTAGCCGGGAAGATGAATAGCGAAGTTCTTACCGAACTCTTCCCACTCAGACTGGAGCAACACTGCGTCCTGACACTGTGCTAAAACAAgttcaaatcaacaaaagacAACTAAGGAAAACCAAAACGAACAAACGACAGACGTATACGCTTTATTTCCCGCATATCTCTTCACGGGTCATCTGTCTGGCTCTGCTCGCCTCGAGCTCGCCGGTATTTATGAACCCGCGAAAGCACGAGTCGTGCCAAAACTCCACTGCCGAATCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32056 True 991 lncRNA 0.40 2 14169780 14172077

Neighbor

gene id symbol gene type direction distance location
LOC113531458 LOC108271995 coding upstream 40597 14117983 ~ 14129183 (+)
aldh1l1 LOC108272091,LOC103022276,LOC108427619,LOC105901876,LOC101480024,LOC100704523,LOC102210696,LOC103359410,LOC102300968 coding upstream 55850 14100207 ~ 14113930 (+)
LOC113533298 LOC108272123 coding upstream 111266 14048735 ~ 14058514 (+)
si:dkey-156n14.3 zxdc coding upstream 139088 14022253 ~ 14030692 (+)
LOC113533199 cpne9,LOC106583634,LOC106565248,LOC102776939,LOC106947665,LOC100694516,LOC103466873,LOC106915448 coding upstream 151048 13931140 ~ 14018732 (+)
myl9b myl9,LOC103045271,LOC103386121,LOC106565219,LOC100697131 coding downstream 411250 14583327 ~ 14588319 (+)
quo LOC108271936,LOC107582340,LOC107690824 coding downstream 555080 14727157 ~ 14761927 (+)
tgm2b LOC108271939,LOC108427633 coding downstream 603766 14775843 ~ 14789067 (+)
thumpd3 thumpd3 coding downstream 867780 15039857 ~ 15050797 (+)
LOC113536922 LOC108271893,LOC108436255 coding downstream 880231 15052308 ~ 15063316 (+)
G26921 NA non-coding upstream 115090 14000931 ~ 14054690 (+)
G26884 NA non-coding upstream 296257 13873315 ~ 13873523 (+)
G26875 NA non-coding upstream 333433 13834239 ~ 13836347 (+)
G26873 NA non-coding upstream 344554 13822384 ~ 13825226 (+)
G26848 NA non-coding upstream 540314 13626481 ~ 13629466 (+)
G27262 NA non-coding downstream 298013 14470090 ~ 14470420 (+)
G27269 NA non-coding downstream 318703 14490780 ~ 14491136 (+)
G27275 NA non-coding downstream 324135 14496212 ~ 14496858 (+)
G27309 NA non-coding downstream 383174 14555251 ~ 14555465 (+)
G27311 dlgap4,LOC108272050 non-coding downstream 390140 14562217 ~ 14604546 (+)
tshba tshb,LOC108271948 other upstream 663776 13490161 ~ 13506004 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 837603 13265788 ~ 13332177 (+)
si:ch211-286o17.1 NA other upstream 1418503 12728993 ~ 12751277 (+)
G25908 LOC108272198 other upstream 1642289 12526170 ~ 12527491 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 1956123 12204441 ~ 12213657 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 1106745 15278822 ~ 15304494 (+)
LOC113534559 LOC108272085 other downstream 1616549 15788626 ~ 15790444 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 1911212 16083289 ~ 16103248 (+)
mustn1a LOC108272082,LOC108439813 other downstream 2009094 16181171 ~ 16182309 (+)
tomm6 tomm6 other downstream 2226168 16398245 ~ 16401111 (+)

Expression


Co-expression Network