G27311 (dlgap4,LOC108272050)


Basic Information

Item Value
gene id G27311
gene name dlgap4,LOC108272050
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14562217 ~ 14604546 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU32212
TCTTTGGCTTTTCTGAacacatttttctctgttttagcCCATGAGCCAAACCATATGGTAACATACAGTATCTGACTTTGAAGTTAGTTAAGATCCAGCTGACCTGGCATTCAGCTTTTATTACATTCAGCTCTTTAGTGTCATAGCAAGGAGAGGTAAAGAGAAGCTGGAGAGTTAGCAAAACCAGAAACACATGGAAATTAACTGTGGAAGTCTAGAGTGAAGAGAGGTCCAGTGGCGCTAAGGGCTCTCTCCAGAAAGAAAAaaaaaaatttaaagggGCAATAAATGGTATTTTATCTGTTGTAGTTCAGTCACACATAATTGGATCACTGTTAATTACACGGTTTATGAAGATATTAGAACAGGCAATCATTTCTCCAAAACCCACCAAACCTTCCTACATCTATtttgatttttatgatttttattttccttaagcttttttttaaatcacattttaaaagagaatctccttttaaaaagagaaatgcTCCTTTacaatggagtgtgtgtgcactaacATTAGGCAAGCACCTGATATGAAAGGTATAAATGGTATGAAAGCTTACCACGAAGGGAAAGTCAAGCGGGAGTGAATACCAGCTGGGTGAAATAAAAAAGTGCCCTATACCATTCTTTTCCATTCTAACAGGCTTTTGTTTATCTGTTACTGTTTATCGCAAAGAAATAATTTCTATAGTTTGTACTAGAGGCTGAAATCAATAGACCAAATTAGTAAACAGGAAGACAAATATTTCAGAGAGGGCATACACAAGAAGGCATCCTCTAAGCAAGTATGTGTATGGAAACTTCAGAGGAGTATTTTCTACTGGATGGGGTGGTGAAAGGCAAAAAATCCAAGTGTGGCTACCTTAGTCCACATAGATTAAATCTCTTATCCAAGATATTAGAACATTAAAACAGTCTGATATAGACTTTAGGTGATATAATTATCAGTGATAATAattatcagtaataataataataataataataacaataataataataagtctttGTGAGGTTTTCCTTGGCAGTCTCTGAAAAGAGAAGCTCTTTGTGTGGCCTGTCCACAATTCCCACATTCCCCTTTCTCGATTTTAGGCTGCCACCAAAATAAAGAGCATTTTGCATTTGATATTAGAGCAGAACTGTGTAGCGCTCGAATGTCTTCTCACTCgtcttctctttcctcttcaTTCTTCCCCCTCCCCACATGGGTGAGCTGTGGGCCTGTTTCCTTATTTCTCTTCTCTCAGAGGCGTGTCTGGGCTTCGGGAACGTAGATCTCGATGTTGTCTGAGCTCTCTGTGGCCGAGTTCTGTTTGACCGACTGTGCTCTCTTGGCCGCCATCAGTCTCTTGCGGGCTTCCTGCCTCTGTTTATCTGCCGTCTCACTGCTTTTCTCCCGGTTCAGCACTGCCTTGCTCTTTCCAGGCTTCTTTGGCACAGGTGGAGCCTGCTTCTGAGTTTTC

Function

symbol description
dlgap4 Predicted to enable molecular adaptor activity. Predicted to be involved in regulation of postsynaptic neurotransmitter receptor activity. Predicted to be located in synapse. Predicted to be active in glutamatergic synapse; neuromuscular junction; and postsynaptic specialization.

NR:

description
PREDICTED: disks large-associated protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32212 True 1478 lncRNA 0.39 2 14562217 14604546

Neighbor

gene id symbol gene type direction distance location
LOC113531458 LOC108271995 coding upstream 433034 14117983 ~ 14129183 (+)
aldh1l1 LOC108272091,LOC103022276,LOC108427619,LOC105901876,LOC101480024,LOC100704523,LOC102210696,LOC103359410,LOC102300968 coding upstream 448287 14100207 ~ 14113930 (+)
LOC113533298 LOC108272123 coding upstream 503703 14048735 ~ 14058514 (+)
si:dkey-156n14.3 zxdc coding upstream 531525 14022253 ~ 14030692 (+)
LOC113533199 cpne9,LOC106583634,LOC106565248,LOC102776939,LOC106947665,LOC100694516,LOC103466873,LOC106915448 coding upstream 543485 13931140 ~ 14018732 (+)
quo LOC108271936,LOC107582340,LOC107690824 coding downstream 122611 14727157 ~ 14761927 (+)
tgm2b LOC108271939,LOC108427633 coding downstream 171297 14775843 ~ 14789067 (+)
thumpd3 thumpd3 coding downstream 435311 15039857 ~ 15050797 (+)
LOC113536922 LOC108271893,LOC108436255 coding downstream 447762 15052308 ~ 15063316 (+)
LOC113524957 LOC108271998,LOC108436281 coding downstream 460349 15064895 ~ 15104302 (+)
G27309 NA non-coding upstream 6752 14555251 ~ 14555465 (+)
G27275 NA non-coding upstream 65359 14496212 ~ 14496858 (+)
G27269 NA non-coding upstream 71081 14490780 ~ 14491136 (+)
G27262 NA non-coding upstream 91797 14470090 ~ 14470420 (+)
G27164 NA non-coding upstream 390140 14169780 ~ 14172077 (+)
G27450 NA non-coding downstream 187865 14792411 ~ 14792622 (+)
LOC117598849 NA non-coding downstream 209333 14813879 ~ 14850121 (+)
LOC117596203 NA non-coding downstream 272132 14876678 ~ 14880424 (+)
G27679 NA non-coding downstream 502411 15106957 ~ 15107174 (+)
G27733 NA non-coding downstream 672094 15276640 ~ 15278716 (+)
tshba tshb,LOC108271948 other upstream 1056213 13490161 ~ 13506004 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 1230040 13265788 ~ 13332177 (+)
si:ch211-286o17.1 NA other upstream 1810940 12728993 ~ 12751277 (+)
G25908 LOC108272198 other upstream 2034726 12526170 ~ 12527491 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 2348560 12204441 ~ 12213657 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 674276 15278822 ~ 15304494 (+)
LOC113534559 LOC108272085 other downstream 1184080 15788626 ~ 15790444 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 1478743 16083289 ~ 16103248 (+)
mustn1a LOC108272082,LOC108439813 other downstream 1576625 16181171 ~ 16182309 (+)
tomm6 tomm6 other downstream 1793699 16398245 ~ 16401111 (+)

Expression


Co-expression Network