G27705


Basic Information

Item Value
gene id G27705
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15144705 ~ 15146155 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU32669
CTTGAAAGCTAAGTGCTCCAAGAAAAAGCCAGCACCGTTATTCTTCTCAGACTCATATCTGCTACCGACATTGATCCACAGGCCAAGTGCAGGTGCCATGACCTGTCGTCTCAGAGGCCACTCTCAGCCCATTCTCCAGCGTTGTGACCCGCGTCTCTGGAACACTCAGCAGGCTTTGGGCATAAGACACAGTTGCTTGTCCCCGTCTCAGAGAAAGCAGAACAGGctataaagacagacagagcaaaacaaacactgaaacatGATCGACTTCGCATGTCATCCTAGTTCCAAGACTGGTGAACAGAttagaaagaggaggaggaaaaaaaaaacaaaaaaaaaaaaaaccctatgcTCTATATGTCAGGTTGAAATTGTACTGGTTCCAGTCTATGAGAAACAAACTCAgggcttaaaaaaaataaaaaataaaaaaatctcagttttgGAGAAGAATCTGCAGGACTTATCTAGAGAAATCAATAGGGATGACAGTAAAAAATCTGCAAAAGAatgcaatgtttatttatttctttaattaattaataagctGTGTGGTTAATGAGATATTCAGCCCCAATCCAAAACTTTATGACTACAGAGTAAGGTTGGCAGAAATGGCAAAGCTCTTGGTGAATAATAGGTGAAGATCTTGTGTGCTAGCGCTCCAAATCAGCTAGAGTGTAATGCAGCTATAGCTGATAGCCGGGTCGTGTTGTATGACCTTGCGAGTGGTATGTATTTCACACACCTAACATTAGTCTTTAACCCAAACGCAGAAACACGGCTATTACTTTTCCAGAATCACTGCGCTGGTGCATGTGAACAACGAAACCAGTCTGAAACTAGCCGGTGGATTTGTTGACCTTCTAATGTtggctagctagcattagctacaCGGAGCAGCTAGCCATTATGCTAACTAGTCCGGTGATCTTTAGCTCTCCAAATCTACACCCACTATCGTActaaataatagtttaaaaacAGTAGTGCACCACAGTTTGTGCTCAGTGCTTTCATATTTTTTGATAAactatttagctagctagtatggTCTTCAGCGTAGCCGGGGACCAACGGAAGTCATGTGAATGACAAACGTCTTCTTCAGAAGCCAGTAACCTGCTTTTAGCCTCCAAGCGTTTATTGAAAGCTCCTAAAGCGTTTTCAAAGAACTAGACGCACAGTTTACTCACACTACGAGCTTTAGCCAGAGCTTGGCCCACGGCTCCCCCGAATCTGCACACGGACGCTGCCATCTTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32669 True 1272 lncRNA 0.45 2 15144705 15146155

Neighbor

gene id symbol gene type direction distance location
nprl2 nprl2 coding downstream 105102 15033446 ~ 15039603 (-)
zmynd10 zmynd10 coding downstream 112143 15025127 ~ 15032562 (-)
LOC113535748 rassf1 coding downstream 120172 15010827 ~ 15024533 (-)
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding downstream 135522 14887465 ~ 15009183 (-)
tgm5l LOC108272022 coding downstream 275002 14862967 ~ 14869703 (-)
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding upstream 130750 15276905 ~ 15278713 (-)
rad18 rad18 coding upstream 359489 15505644 ~ 15568428 (-)
srgap3 srgap3,LOC107750258,LOC107657972 coding upstream 472196 15618351 ~ 15727114 (-)
cish LOC108272001 coding upstream 606058 15752213 ~ 15756341 (-)
LOC113530515 wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800 coding upstream 616381 15762536 ~ 15775878 (-)
G27699 NA non-coding downstream 14445 15130003 ~ 15130260 (-)
G27652 NA non-coding downstream 79494 15064885 ~ 15065211 (-)
G27600 NA non-coding downstream 134044 15010325 ~ 15010661 (-)
G27502 NA non-coding downstream 260218 14884255 ~ 14884487 (-)
G27484 NA non-coding downstream 284459 14860005 ~ 14860246 (-)
G27706 NA non-coding upstream 4657 15150812 ~ 15151049 (-)
G27801 sec61a1,LOC103036990,LOC108436273,LOC108272151,LOC107384934 non-coding upstream 98160 15244315 ~ 15246353 (-)
G27904 LOC108271919 non-coding upstream 236759 15382914 ~ 15384090 (-)
G27932 NA non-coding upstream 326186 15472341 ~ 15472547 (-)
G27935 NA non-coding upstream 331635 15477790 ~ 15478008 (-)
pxmp4 pxmp4,LOC103464829 other downstream 268715 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1086260 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 1237516 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 1497528 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 1509961 13632262 ~ 13634744 (-)
G27843 NA other upstream 151154 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 310480 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 315795 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 979675 16125830 ~ 16135715 (-)
G29158 NA other upstream 2126800 17272955 ~ 17280173 (-)

Expression


Co-expression Network