G27764


Basic Information

Item Value
gene id G27764
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15471532 ~ 15471756 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU32738
CTGAATCCTAACTGCAGGCTATTTTTCATGGTGAATTAGGCCTGCTTgcttctgtaaataaaatttaacatatTCGATTGAAGCCACTGAGTGCTGGGCATGTTACAGGAGCTCAGAGGAATGTTCAGAGATCAGAAAACCACAAATCCTGTCCAGCATGCTACAAAAGAGCACAGAACTGAAAAATTCAGTCCTATATGACATACGATGATTTCCTCAgttgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32738 True 225 lncRNA 0.40 1 15471532 15471756

Neighbor

gene id symbol gene type direction distance location
cav3 cav3,LOC107749619,LOC107584510,LOC107658089 coding upstream 10530 15456646 ~ 15461002 (+)
LOC113529636 NA coding upstream 18405 15451434 ~ 15453127 (+)
gpr61l si:dkeyp-111e5.4,LOC108271598,LOC108436251,LOC107658083,LOC107750281,LOC107567083,LOC107584511 coding upstream 25362 15441220 ~ 15446170 (+)
parp3 parp3,LOC107749614,LOC107673445 coding upstream 31204 15432270 ~ 15440328 (+)
grm2a grm2,grm2a,LOC107657935,LOC107673619,LOC107567094 coding upstream 44332 15387228 ~ 15427200 (+)
hemk1 hemk1 coding downstream 263088 15734844 ~ 15749493 (+)
LOC113532530 synpr,LOC108271634,LOC108436247,LOC103022280,LOC107658112,LOC107673482,LOC107584506,LOC107567085,LOC107712113 coding downstream 415417 15887173 ~ 15891814 (+)
LOC113527532 slc6a13,LOC108271735,LOC108413697,LOC107584422 coding downstream 521263 15993019 ~ 16010839 (+)
rab44 NA coding downstream 563697 16035453 ~ 16048798 (+)
trub2 trub2 coding downstream 591368 16063124 ~ 16066779 (+)
G27733 NA non-coding upstream 192816 15276640 ~ 15278716 (+)
G27679 NA non-coding upstream 364358 15106957 ~ 15107174 (+)
LOC117596203 NA non-coding upstream 591108 14876678 ~ 14880424 (+)
LOC117598849 NA non-coding upstream 621411 14813879 ~ 14850121 (+)
G27450 NA non-coding upstream 678910 14792411 ~ 14792622 (+)
G27769 NA non-coding downstream 17780 15489536 ~ 15489764 (+)
G27979 NA non-coding downstream 143268 15615024 ~ 15616714 (+)
G28040 NA non-coding downstream 302620 15774376 ~ 15775849 (+)
G28041 NA non-coding downstream 305142 15776898 ~ 15778600 (+)
LOC117599223 NA non-coding downstream 362722 15834478 ~ 15837386 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 167038 15278822 ~ 15304494 (+)
tshba tshb,LOC108271948 other upstream 1965528 13490161 ~ 13506004 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 2139355 13265788 ~ 13332177 (+)
si:ch211-286o17.1 NA other upstream 2720255 12728993 ~ 12751277 (+)
G25908 LOC108272198 other upstream 2944041 12526170 ~ 12527491 (+)
LOC113534559 LOC108272085 other downstream 316870 15788626 ~ 15790444 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 611533 16083289 ~ 16103248 (+)
mustn1a LOC108272082,LOC108439813 other downstream 709415 16181171 ~ 16182309 (+)
tomm6 tomm6 other downstream 926489 16398245 ~ 16401111 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 3303014 18774770 ~ 18835721 (+)

Expression


Co-expression Network