G27843


Basic Information

Item Value
gene id G27843
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15297309 ~ 15299019 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU32819
GAGTGTGCGCCAGCTGCGAGAGCTGGCATCTTTAGCAGCATTTATCAGCTCTGAGATCCCATCTTCTGTTATCTCTTCCACTGCTTTCAGCACATCATCAGCGTGTCCTAGATAGATACTAGAAGAAAATAGGAAATAGACAGAAAGGTCAAAAATAGGTCAAGAGTTCCACCCAGGCATGACTGAAATATCAGCACAATAACATGGGAGGAACCTGAGGAGACTCTGGAGTGCATCGTTGTGTTTGTTCCCACGTTCCCTCCCTCCACTTCCTGTCACCCACTCCTGACACAGGAAATGCTTAGCCAGGGACGCTGGAGGAAAGCATTACATACTGTTAGCCAAAAGCTACAAGGAAGTAAGCTTATAATTCAAATAGACGtgttaaagtaaatttaaagtGTTTCATAAAGGAGTGTGCTGAAGCAGTGTGTATAGGTTGACAGACCGGTGTGTTCCCTGTAGAAGCTCTGGCTGGATCTTCCATACTGACTGAGCACAATGAGCAGCTGCGTCAGGATCAGAGCCGTGCTTAAGCTGGGCACAGTGCTCCGGAAATTCAGCAGCTGCTCCAGGGTTTGGTCTGCATCTTTCTCCTTCAGTCGGCTGGCAAGCACACTGAGAGCACTCTTTAACAGCGGCCTCTGTTCCAGCTGGGAGAAGCCAGACCTGAAAACATATCACAacctcacacactgcatcagcTCTAACTTCACACAACCAGATCTTAACACCAGAACCTGTGTGAGatcaacaccaacaccaacaacaaaaaaaactcttggGCTTGTTTTCCAGAAGCACATAAAGTCTCCGAGTGCTTTCTAATGCTAATTAGAgaaaaattaattgaattaaaatctgATCTTCAGTTGCATTTTGTAGTGAAATCCTGAATTGACCTTtgtagtttaaacttctttcattgtcctggtttcactttggttaatggtttcctgtTACCCACAGTGCAGTTTGACTACGTGCTGATAGTAGTGCCAGTTAGAATTAGCTCTCgtttcatctctacctaaaaatgagtgatgcagcagcactttagtcctttagcctgtccagctctctctcctcctcatctgtacactctgctcaaacagataatgttccaaagcttcaactttcatgctaataccatcGTCAACATCATCAGTCTTGATATCTGGTAGATCACTAGCTAGCCGATTCGAGTATCTGCTGTAACTGcattgtatagctgcattgcattgtggaactttgagtccagtaTTTGCTGTCTCTGCTACTTTTTCTTTGGATTTCTCATttactttttcttgttttttggaTTTACTTTTTCTTTGGATTTTCTTCTATTAAATGGC

Function

GO:

id name namespace
GO:0007259 receptor signaling pathway via JAK-STAT biological_process
GO:0097696 receptor signaling pathway via STAT biological_process

KEGG:

id description
ko04668 TNF signaling pathway
ko04380 Osteoclast differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
TU32819 True 1358 TUCP 0.43 2 15297309 15299019

Neighbor

gene id symbol gene type direction distance location
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding downstream 18596 15276905 ~ 15278713 (-)
nprl2 nprl2 coding downstream 257706 15033446 ~ 15039603 (-)
zmynd10 zmynd10 coding downstream 264747 15025127 ~ 15032562 (-)
LOC113535748 rassf1 coding downstream 272776 15010827 ~ 15024533 (-)
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding downstream 288126 14887465 ~ 15009183 (-)
rad18 rad18 coding upstream 206625 15505644 ~ 15568428 (-)
srgap3 srgap3,LOC107750258,LOC107657972 coding upstream 319332 15618351 ~ 15727114 (-)
cish LOC108272001 coding upstream 453194 15752213 ~ 15756341 (-)
LOC113530515 wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800 coding upstream 463517 15762536 ~ 15775878 (-)
wdr82 wdr82,swd2,LOC106565976 coding upstream 479171 15778190 ~ 15784244 (-)
G27801 sec61a1,LOC103036990,LOC108436273,LOC108272151,LOC107384934 non-coding downstream 50956 15244315 ~ 15246353 (-)
G27706 NA non-coding downstream 146260 15150812 ~ 15151049 (-)
G27705 NA non-coding downstream 151154 15144705 ~ 15146155 (-)
G27699 NA non-coding downstream 167049 15130003 ~ 15130260 (-)
G27652 NA non-coding downstream 232098 15064885 ~ 15065211 (-)
G27904 LOC108271919 non-coding upstream 83895 15382914 ~ 15384090 (-)
G27932 NA non-coding upstream 173322 15472341 ~ 15472547 (-)
G27935 NA non-coding upstream 178771 15477790 ~ 15478008 (-)
G27953 NA non-coding upstream 204813 15503832 ~ 15504043 (-)
G28173 NA non-coding upstream 316006 15615025 ~ 15616748 (-)
pxmp4 pxmp4,LOC103464829 other downstream 421319 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1238864 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 1390120 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 1650132 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 1662565 13632262 ~ 13634744 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 157616 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 162931 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 826811 16125830 ~ 16135715 (-)
G29158 NA other upstream 1973936 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 2173311 17472330 ~ 17529315 (-)

Expression


Co-expression Network