G27904 (LOC108271919)


Basic Information

Item Value
gene id G27904
gene name LOC108271919
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15382914 ~ 15384090 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU32884
gactatattgttattttatttcaatccATATTTTGTCCATTGTTTTCTTGGAGGATGTTAACAACAAACACATCTGGCACATGCAGTAAGGATAGGGCTGTTTCTGTATGGAGCTATAACTAGTTATGATGAAGTTAACAGtcactgagcacacacacacacacacacacatacacacacatacactcaacaTTTACTTCCCTTTAACACCATTATAAAACAACTGACTCGACAGACATACATAAACTGATAATAAAAGCAGTTAGTTCATAATCGAATAATCAAATCTTATATTATTGTCTACATATCATTTGCtctaaaaatacatatttgttTGGTTACATAATTTGGAATTATTATTTAGAATTCCCTAGATGAGTTAtccattttgtttacatttttccaagATTATTTCAGTAGCACAAGCTTCGATTACACTGTAAGGAAATACATTATTTGTGCTGGGTGTCATTAGTTTATTGCCTCAAAGATGCTGAAACAGGTGATTCACTGTGATAAAAAAATCAGCAGGGATTCCCTTTTCAAATAACTGGCAGCTTTTATGAGATATTTTATGAGATACTGGACTAGAATCAGTGAGCTGAGGAAATacctttaagttttttttttttttttaggtttgatTACATAATGTTTATGTGACCTGCAGTAAGACTGCCACGTGTTTATAAAAACTGCCAAGATTcacccatttattattaaacctcTGATTACATATGTTAAGACTTTGCCTAGGTGACTAAGAAGCACCTCAAACGGAAacgaaaacaagaaaaagaagattCATTAACTACTTCAAACATGCACACGCAATCTATCCCTCATTACTCTCCCCTTCATTATCTCCTCTTTTCTCATTGTCCACCACATGATCCTCCTCAGCATTTTCCCtttccttctcctcttcctcaatGTCCATGTCCAGTTCTTCAAAGGATGAACCACTTCCTACAGACTCACTGGAGCCCTTGGCCCCCTGGTCTCCTTCCTCCGTCTGAGAATCTCTCTCATCCAGCGGTGGACTCTGCTGCACCACAGGCGAGGAGCTCTCCCCCATCTCGCTGCTTTCGGTGTCTGCCTCCATCACTGCTACGCCGCTCTCAGATGTGCAG

Function

NR:

description
PREDICTED: testis-expressed sequence 264 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32884 True 1133 lncRNA 0.38 2 15382914 15384090

Neighbor

gene id symbol gene type direction distance location
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding downstream 104201 15276905 ~ 15278713 (-)
nprl2 nprl2 coding downstream 343311 15033446 ~ 15039603 (-)
zmynd10 zmynd10 coding downstream 350352 15025127 ~ 15032562 (-)
LOC113535748 rassf1 coding downstream 358381 15010827 ~ 15024533 (-)
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding downstream 373731 14887465 ~ 15009183 (-)
rad18 rad18 coding upstream 121554 15505644 ~ 15568428 (-)
srgap3 srgap3,LOC107750258,LOC107657972 coding upstream 234261 15618351 ~ 15727114 (-)
cish LOC108272001 coding upstream 368123 15752213 ~ 15756341 (-)
LOC113530515 wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800 coding upstream 378446 15762536 ~ 15775878 (-)
wdr82 wdr82,swd2,LOC106565976 coding upstream 394100 15778190 ~ 15784244 (-)
G27801 sec61a1,LOC103036990,LOC108436273,LOC108272151,LOC107384934 non-coding downstream 136561 15244315 ~ 15246353 (-)
G27706 NA non-coding downstream 231865 15150812 ~ 15151049 (-)
G27705 NA non-coding downstream 236759 15144705 ~ 15146155 (-)
G27699 NA non-coding downstream 252654 15130003 ~ 15130260 (-)
G27652 NA non-coding downstream 317703 15064885 ~ 15065211 (-)
G27932 NA non-coding upstream 88251 15472341 ~ 15472547 (-)
G27935 NA non-coding upstream 93700 15477790 ~ 15478008 (-)
G27953 NA non-coding upstream 119742 15503832 ~ 15504043 (-)
G28173 NA non-coding upstream 230935 15615025 ~ 15616748 (-)
G28182 NA non-coding upstream 297480 15681570 ~ 15682044 (-)
G27843 NA other downstream 83895 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 506924 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1324469 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 1475725 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 1735737 13640381 ~ 13647177 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 72545 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 77860 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 741740 16125830 ~ 16135715 (-)
G29158 NA other upstream 1888865 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 2088240 17472330 ~ 17529315 (-)

Expression


Co-expression Network