G28132 (fkbp5,LOC108271732,LOC108413698,LOC107712109)


Basic Information

Item Value
gene id G28132
gene name fkbp5,LOC108271732,LOC108413698,LOC107712109
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16013347 ~ 16014109 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33146
CTTGGCATCATGTTCAGCAAACCTCTGGAACATGTTGGCATAGATCTTTTTATCACGCTCATGGTGTTCACGTATCTTGCGTTGGCAGACAGCGATCTGGCAATGGGCTGCACGGTTGGTGGGATTGACCTGAAGAACTTGCCGGAAGTCCACTAGGGCCAGACTGAATTCATTCCTCAACAGATGAGCCTCTCCGCGCCGATACAGCGCCTTCTCATTCGCAGAGTCCAGCTCCATCACCTTGTTGCAGCTTTCCACAGTTTGAGAGTACTCCCGGAGGCGTAAGTAACACAGAGCCAGGTTTAAATGGGCAACAAGCAGGAGGGCCTGAATGGCCTGCTGTTGCTCCTTTCCAACCCCACACTCCATCTCCAGCCATGTTACAATACGCTGATACTGAATGACAGCCTGGTAGTATCGCCCAGCCTGAAACAACAACGCAGGCATATTCACAAATGTCACAATTTGTGCAAAAGCCACACTGACATGCATGTACAGTGATATTAcgaaaaatctaaaaatcaaCATCATAATCAATATAGTGAATCCATGACTCATAACAATGATCATCTATTAAGTACTGAGGTTACATTCTGGCACATTTTTAAGTAGCGTCACATGACAGACCAGATCAACAcgtaattaag

Function

symbol description
fkbp5 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Is expressed in gut; head; and regenerating fin. Human ortholog(s) of this gene implicated in major depressive disorder. Orthologous to human FKBP5 (FKBP prolyl isomerase 5).

NR:

description
PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP5-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33146 True 647 lncRNA 0.46 2 16013347 16014109

Neighbor

gene id symbol gene type direction distance location
LOC113527532 slc6a13,LOC108271735,LOC108413697,LOC107584422 coding upstream 2508 15993019 ~ 16010839 (+)
LOC113532530 synpr,LOC108271634,LOC108436247,LOC103022280,LOC107658112,LOC107673482,LOC107584506,LOC107567085,LOC107712113 coding upstream 121533 15887173 ~ 15891814 (+)
hemk1 hemk1 coding upstream 263854 15734844 ~ 15749493 (+)
cav3 cav3,LOC107749619,LOC107584510,LOC107658089 coding upstream 552345 15456646 ~ 15461002 (+)
LOC113529636 NA coding upstream 560220 15451434 ~ 15453127 (+)
rab44 NA coding downstream 21344 16035453 ~ 16048798 (+)
trub2 trub2 coding downstream 49015 16063124 ~ 16066779 (+)
hdhd3 hdhd3 coding downstream 54295 16068404 ~ 16071040 (+)
sfi1 sfi1 coding downstream 125374 16139483 ~ 16156080 (+)
zgc:172271 LOC108271876 coding downstream 143416 16157525 ~ 16166031 (+)
LOC117599231 NA non-coding upstream 52477 15943362 ~ 15960870 (+)
LOC113536643 NA non-coding upstream 105293 15896428 ~ 15908054 (+)
LOC117599223 NA non-coding upstream 175961 15834478 ~ 15837386 (+)
G28041 NA non-coding upstream 234747 15776898 ~ 15778600 (+)
G28040 NA non-coding upstream 237498 15774376 ~ 15775849 (+)
LOC113533806 NA non-coding downstream 15025 16029134 ~ 16032135 (+)
G28150 NA non-coding downstream 59113 16073222 ~ 16076550 (+)
G28156 NA non-coding downstream 91934 16106043 ~ 16106272 (+)
G28160 NA non-coding downstream 107868 16121977 ~ 16122332 (+)
G28162 NA non-coding downstream 108787 16122896 ~ 16123140 (+)
LOC113534559 LOC108272085 other upstream 222903 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 708853 15278822 ~ 15304494 (+)
tshba tshb,LOC108271948 other upstream 2507343 13490161 ~ 13506004 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 2681170 13265788 ~ 13332177 (+)
si:ch211-286o17.1 NA other upstream 3262070 12728993 ~ 12751277 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 69180 16083289 ~ 16103248 (+)
mustn1a LOC108272082,LOC108439813 other downstream 167062 16181171 ~ 16182309 (+)
tomm6 tomm6 other downstream 384136 16398245 ~ 16401111 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 2760661 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 2803293 18817402 ~ 18817475 (+)

Expression


Co-expression Network