G28150


Basic Information

Item Value
gene id G28150
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16073222 ~ 16076550 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33168
gtgagtgtctaataacaacaaaaatgctACCTCTGGCTAAATGTTCTTTGCTTGCGTGTGTCTATGTGACTTCCATCTATACTATACACTGTATGTAGGTAATAAGTGGACAGAGGTTAAAAAAGTGAACATGCTGGAAAGGGAACAGAGCAAAGCAagaaaaagctgaaaataaTTCTCATTCATGTAAAGGTCTAAAATAGGGATATGAGACTTCTACTCCTGGAAGGCCACAGCACTGCATTATACCTCATTGAACACAGTAGATGTactataaagaaaagaaaaaactcagtAGGGCTGTGGACTGCCAAGACCAGCGTTTGATGCTTTTGTACTAAAAGAACctaaaaactgaaaagaaaaaaaaggttcaaatAATTTAACTtcctgcaaaaataataataataataataataataataataaacaccaagTCAGCAAGTctttctgcattttaacatttttaggtGAAAAAGGTATACATAAAGGAACATAGTCAGGAACATAGAAATATGATGCAGCTGATTATTGAACCAACAACCATGTAATTAATGACGATCACAAGCAACAACTATCCAGGAACACAGAGCTATTTATAATCCTGTTGTATCTAGGATCAAACAAATTGTGCATGATGCAATTTTATAGCGAGATGTTATAGCACTGtgtaatttacagtaaaataaataaacatgtattatAATGACAAAGTAGTTGACAGCTCTATACGTGTTTTTACACAGAaaggacaaaaaacaaaatgttttaagacTGTAAAGTCTAGATGGTATATGAACATAACATTGCGAGtacagttttccttttttttttttttttaaatactggatAACAAAAACAATGTGTCAAAGTAAACcaataaacagatttacatGATCAAATAGATCAAATAGACAGAGCAGAAGAGATGAGATCTCAATCATCTCTCACAATTAGTATTCATTTGCTTGCaaccacttttttcccctttaatatCCAATTAATTTCCTGTATTTGCTCATGTTAAAtataacatcttttttttttttctttactttcagTTTGGATTAGAATTTTTTCTCCAGTAAATAATCAGGTTTTTTTAAGTGACATCATTTATATAAAGTGCTCAATGCCAGCAACACTCTCTCCCTCGGTCCTTTGGATGAAGTCTTATTCAATCAATTTTCCCTAAAACTGTGAACTATTACTACAGTAATGTAACTCGTGTTAATGATTTCTAATTTTGGAACATCTTGTGCATAAAGCAGGACTGTTTGCATCTACTGTGTCATTGGGCAGTTTTAGGGTTCAGCAAAAGCCGATGACTGAATAAAACAGTATCAAGGTTTCACCAGTATCTGGATGCACCTAGTCACCATACATTTACATAAGAACAATGACAAAAGGCTTGAGGGTCAATAAGACAACATACACAATGTTAAACAAGGTTTAAAACTTTCTAAAACTCAGAGTCTAAAATTTTCGGAATAGatttgcagtaaacagtaacaagCTTTAAATAAGAAACAAAGCCGTCACGGCTGTCTATATGTGTATACATAGTtgagtgtgagcatgtgtgtggatTATATGTAGAAGTGAACATGTACATAGTGCTTTGTGAAGTGAATTTAGTGGATTTATCACAATTATATCTACAAACACTCTTTAATCAAAATCAGGCCCCACTAAGGACTGGGCCTGTTTAGCACGTTTCAGATTTTGTTTTCCAGAAAAGAGCCAGTGTCTATTTTACTATTGCCATCAGGGTAAGAGTGCGGTGCaacagtgtatagtgcatatGTGTAAACACACTTGTGCACACCCAAACTTTCAATCATTAATGCAATTTCTGCCAAAACCATACATGTTGTGAGTCTGATTTTAGAAGTTATACAATATTGTCAAAAACCTTGTAACAATGATCTTTCCACTATCAAGAACTGAAACAGGAGAAAGCTCAACTCAAGGGTATGTGAGgcaagtatgcatacttatgtTATTAAATGGAATCTGTGAATAAGAATATCTcaagtgcaataataataaagaacatAAGCATAAAATACCCTCTGGTTTCCAAGACCCAATTGTTTTCATCAGAAGCCTGCCAATGActgttaatttgtaaatatatcattattgaatatattaatatatttgaaaaatactCTGAAAACCTTGTTTCTTCGTCCATTATTATCATCCAAGATTATCATCATTTAAGATCCAAGATATCTAAGATTATTCTTCCATTCTTAGAACAATTAACTGCGTGTGACACTCCTGAAtaactaaaacatttaaaactgtaTCTCCATTACACCACACaccaaaagtttggacacatgTAACTGGTCTTGATAATCTTAAAAGATATCTAAAGGCATATGATTGAAATTTGtttcaaatgcaaaaataaatagttttcatttaaaacttaGAAACTACAGCCAATAACTGCTCAGCATACATGGGAACTCTTGGAAATTAACCCAACTCTTCACAGATTTCTCATGAAGCTTGTTAAtaactattttctttttttttttttttttttttgtttagcaaTTTTTGTTCCCTGTAAAATTCaacatttttggattttttgttattttagtcctaatgtggaaaattaaacaaaatcttTCTACAAGTAGGTGTATCCAAACTTTTGACAAGTACTATCTCTCTTTTGGTGTCACATGCCATAAACATTTTGTTAGTTTTTCCAAGCTTTTTTGTGATTTGAAAAATCAAAATATTCCTCTTATCATCCTCTTATCATGCTGTCCACTTCTCATGTCAAAATGAACATAGTTCTCTGTGTCTCGAGAATGTCCAAGCACCCTAAGCACAttaattcatgattttttttcagagttCTGAATCTCATTCTTACTTTTCATATCCAGCTGAGCAGGCTTTAAGCACTAGTCCGTTACTCCTTCACTGCAGAGCTTTTCCTCACAGGATCTTAAGTCTGACTGGATCTTCACTCCTGTAATCTGTTCCAACACAATAGTATGAAAGTCCAGGAGATCAATATCTGTGTTGGGAAGTTACCGTAAATTGGAAATAAACCGTCTtccatcattttagttttacattccacaaaaaaataaaaactgaaaggCTAAGTTTACTTCCACTGAGTATGTAAGTTCTGAATTCCACATCTGGTTTGGTTCTCAGCATGCTGACATGAGTCAGTAGCTTAATCCAGGGATAATCCTTGGGATTTCAGGTGGCAGAATGGAGAACATAGGTACACCAACAGCACTACACTGGACtcatttcaaactgctgcagaaaaaatacagaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33168 True 3329 lncRNA 0.33 1 16073222 16076550

Neighbor

gene id symbol gene type direction distance location
hdhd3 hdhd3 coding upstream 2182 16068404 ~ 16071040 (+)
trub2 trub2 coding upstream 6443 16063124 ~ 16066779 (+)
rab44 NA coding upstream 24424 16035453 ~ 16048798 (+)
LOC113527532 slc6a13,LOC108271735,LOC108413697,LOC107584422 coding upstream 62383 15993019 ~ 16010839 (+)
LOC113532530 synpr,LOC108271634,LOC108436247,LOC103022280,LOC107658112,LOC107673482,LOC107584506,LOC107567085,LOC107712113 coding upstream 181408 15887173 ~ 15891814 (+)
sfi1 sfi1 coding downstream 62933 16139483 ~ 16156080 (+)
zgc:172271 LOC108271876 coding downstream 80975 16157525 ~ 16166031 (+)
sirt4 sirt4 coding downstream 90179 16166729 ~ 16171224 (+)
rft1 rft1,LOC107721169,LOC107568194,LOC107584424,LOC107673548 coding downstream 98649 16175199 ~ 16180134 (+)
eefsec eefsec,LOC107667374,LOC107584423,LOC107568193 coding downstream 111785 16188335 ~ 16195260 (+)
LOC113533806 NA non-coding upstream 41087 16029134 ~ 16032135 (+)
G28132 fkbp5,LOC108271732,LOC108413698,LOC107712109 non-coding upstream 59113 16013347 ~ 16014109 (+)
LOC117599231 NA non-coding upstream 112352 15943362 ~ 15960870 (+)
LOC113536643 NA non-coding upstream 165168 15896428 ~ 15908054 (+)
LOC117599223 NA non-coding upstream 235836 15834478 ~ 15837386 (+)
G28156 NA non-coding downstream 29493 16106043 ~ 16106272 (+)
G28160 NA non-coding downstream 45427 16121977 ~ 16122332 (+)
G28162 NA non-coding downstream 46346 16122896 ~ 16123140 (+)
G28287 NA non-coding downstream 78436 16154986 ~ 16155244 (+)
G28361 NA non-coding downstream 192159 16268709 ~ 16269552 (+)
LOC113534559 LOC108272085 other upstream 282778 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 768728 15278822 ~ 15304494 (+)
tshba tshb,LOC108271948 other upstream 2567218 13490161 ~ 13506004 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 2741045 13265788 ~ 13332177 (+)
si:ch211-286o17.1 NA other upstream 3321945 12728993 ~ 12751277 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 6739 16083289 ~ 16103248 (+)
mustn1a LOC108272082,LOC108439813 other downstream 104621 16181171 ~ 16182309 (+)
tomm6 tomm6 other downstream 321695 16398245 ~ 16401111 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 2698220 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 2740852 18817402 ~ 18817475 (+)

Expression


Co-expression Network