G28173


Basic Information

Item Value
gene id G28173
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15615025 ~ 15616748 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33196
ttaaacgtaaataaatacataaaaggGTGGTATCGTTGCCATCTCACAGcctactgtctgtgtggagttttgcatgatTGTCCCGTGTCCACAAAGGTTTGAACAATCATGAAAAATCTTGcatgtaggtggactggctacactaaattgcctctaggtgtgaataagtgtgtgaatgtgtgtgtgcaatgtgcCCTGTGaaggactggcatcccattcatgcttcacacccagtgttccctggatagcctctggataataataataataataataataataataataatacaggtACAAATGATGTAGTCTTGAGGGTCACACTTCAGTGAGGAAAGGTATGGTTTAGTACTTTTATTTATGTGACTTTTATTATGTGATATTGTGGTGCTCTGATGAGTAGTCATTAATTAGATCCACTTCCACTCTGACTGGTGATTCCTCTGGTGTCTTTGTTTGGAAAGCATGGAGACTGTCTTTGGTCCTGCAGCAGGTCCTGCACTGCCCTCTGGAGGCTGGAAAGAGTTTCCTCTGTGCTCTTCATCTCCCTCTACTGGAAAATGCTGGATTTATGTGTTTAATCAGAGAGCTGTCACATATGGAGTAAAGCAATTTGTCTGTGTAGAGTACACCGTTAAATTAAAATTGGCACTAAACAGTTGTGCATCATTACAGTGAATCACACAATGTATCATCTATGTATATGGACACACTGCCCTCCACCCTGGCATTAGTCATGATGTTAAATCAGTAATACTAATTTGGTTGTTCTTGATCTCATTTGAAACATTGACCACTAACAGCTACTCCAGATATGAGCACAAACAGCACAATTCCAAATTACCATAAAGTAAATGACTGTATTATCTATGTTATGtgtcaaactttatttttacttacCTTTTAACAATTTTGTGGCGCATTCATTTTTGTTGACTTTGATAAACTGTTTTGATTATGATCAAGGTTCTTGGAGTTTATCGTATTATAAATTGATAATAATCAGGAACGTCTGGTCAGCTATCAGCAGATGGCTTGTTGCCCTGCATTGGATTCTTTGAAAGTGCTCATGAGTAGGAGCTGTTGAACTTGTTGCTAGAGATTAATGACAGATGTATGAAGGCTGCAGTCCATATCACACCATACTGAGGTTTTAATAATCACCATCTGTTTCTTGTGTGTTATATAATTCCTACCATTCCTGTCTCCTCTCCGTATGACCTGAGACTGTGCTGCACAAAAGCTTTGACTTTCTGCTCTTCGTATAATCCTTCTACCTATCCTTTTAGCTAATGCATTGCAGTATTTAAGGCCTAGTCAAATCTTCTATGGTACTTGCACGATTACTGAGGCACTTGGTGCACTCCTGTCCATTACGGACTGTATGTGGACCATGAattctgaaagtttttttttttttttctgtcagtttgAGAACGTATGCTCTAATGGGTGTTTATTGTATGTATGCTTGATTGTATGTATGCTAAGGTAACAGACTTCCTCCTTCTCTAGACACAGCATTCATAAAGCCAAACTTGCGTCTGTCTGTATTAGTGAGTTGTGAATATTGACATACTGTTTTTCGCCCTCCTATTAACCCTTCTGTCTaatgatgctgtttgttcatgAGTGTTTGGATGGTTGATTCCTCCCTGTGTAGGTTAACTGTACACCATGCCACTGTTTGGATGTGAAGAATTCTcaaatccaaaataaaaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33196 True 1724 lncRNA 0.39 1 15615025 15616748

Neighbor

gene id symbol gene type direction distance location
rad18 rad18 coding downstream 46597 15505644 ~ 15568428 (-)
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding downstream 336312 15276905 ~ 15278713 (-)
nprl2 nprl2 coding downstream 575422 15033446 ~ 15039603 (-)
zmynd10 zmynd10 coding downstream 582463 15025127 ~ 15032562 (-)
LOC113535748 rassf1 coding downstream 590492 15010827 ~ 15024533 (-)
srgap3 srgap3,LOC107750258,LOC107657972 coding upstream 1603 15618351 ~ 15727114 (-)
cish LOC108272001 coding upstream 135465 15752213 ~ 15756341 (-)
LOC113530515 wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800 coding upstream 145788 15762536 ~ 15775878 (-)
wdr82 wdr82,swd2,LOC106565976 coding upstream 161442 15778190 ~ 15784244 (-)
cplane2 rsg1,LOC107673497,LOC107750284,LOC107712114 coding upstream 174820 15791568 ~ 15794776 (-)
G27953 NA non-coding downstream 110982 15503832 ~ 15504043 (-)
G27935 NA non-coding downstream 137017 15477790 ~ 15478008 (-)
G27932 NA non-coding downstream 142478 15472341 ~ 15472547 (-)
G27904 LOC108271919 non-coding downstream 230935 15382914 ~ 15384090 (-)
G27801 sec61a1,LOC103036990,LOC108436273,LOC108272151,LOC107384934 non-coding downstream 368672 15244315 ~ 15246353 (-)
G28182 NA non-coding upstream 64822 15681570 ~ 15682044 (-)
G28191 NA non-coding upstream 104019 15720767 ~ 15725456 (-)
G28207 NA non-coding upstream 170105 15786853 ~ 15788153 (-)
G28232 NA non-coding upstream 312293 15929041 ~ 15933858 (-)
G28256 NA non-coding upstream 419085 16035833 ~ 16045675 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 119816 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 154024 15456635 ~ 15461001 (-)
G27843 NA other downstream 316006 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 739035 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1556580 14050401 ~ 14058445 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 509082 16125830 ~ 16135715 (-)
G29158 NA other upstream 1656207 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1855582 17472330 ~ 17529315 (-)
G29263 NA other upstream 2332409 17949157 ~ 17949718 (-)
G29279 NA other upstream 2454239 18070987 ~ 18072909 (-)

Expression


Co-expression Network