G28287


Basic Information

Item Value
gene id G28287
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16154986 ~ 16155244 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33361
ATAGTCTGTAAGTGAACATGTTCAACTGAATATCCTGACTATGGCCTGTTTATAATTGGTCCATCAGTTTTTAACACATGAATtttgaaaaaatgcaaacatcaGCTTCATTCAGAAAGACATTTTTTGGACTTGGAGTACAGGTTTCTGTAGAGTACAATTATGCAACCTGTTTGCATTTGAATTTAATCGTTGACTATTTATTTTGCACATCACATCTCCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33361 True 223 lncRNA 0.33 2 16154986 16155244

Neighbor

gene id symbol gene type direction distance location
hdhd3 hdhd3 coding upstream 83946 16068404 ~ 16071040 (+)
trub2 trub2 coding upstream 88207 16063124 ~ 16066779 (+)
rab44 NA coding upstream 106188 16035453 ~ 16048798 (+)
LOC113527532 slc6a13,LOC108271735,LOC108413697,LOC107584422 coding upstream 144147 15993019 ~ 16010839 (+)
LOC113532530 synpr,LOC108271634,LOC108436247,LOC103022280,LOC107658112,LOC107673482,LOC107584506,LOC107567085,LOC107712113 coding upstream 263172 15887173 ~ 15891814 (+)
zgc:172271 LOC108271876 coding downstream 2281 16157525 ~ 16166031 (+)
sirt4 sirt4 coding downstream 11485 16166729 ~ 16171224 (+)
rft1 rft1,LOC107721169,LOC107568194,LOC107584424,LOC107673548 coding downstream 19955 16175199 ~ 16180134 (+)
eefsec eefsec,LOC107667374,LOC107584423,LOC107568193 coding downstream 33091 16188335 ~ 16195260 (+)
LOC113527941 rab7a,LOC108271868,LOC106518505,LOC101061812,LOC105017315,LOC108254780 coding downstream 71761 16227005 ~ 16230782 (+)
G28162 NA non-coding upstream 31846 16122896 ~ 16123140 (+)
G28160 NA non-coding upstream 32654 16121977 ~ 16122332 (+)
G28156 NA non-coding upstream 48714 16106043 ~ 16106272 (+)
G28150 NA non-coding upstream 78436 16073222 ~ 16076550 (+)
LOC113533806 NA non-coding upstream 122851 16029134 ~ 16032135 (+)
G28361 NA non-coding downstream 113465 16268709 ~ 16269552 (+)
G28402 LOC108271943 non-coding downstream 178207 16333451 ~ 16334652 (+)
G28404 NA non-coding downstream 180948 16336192 ~ 16336694 (+)
G28405 NA non-coding downstream 190401 16345645 ~ 16346086 (+)
G28410 NA non-coding downstream 202838 16358082 ~ 16361347 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 51738 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 364542 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 850492 15278822 ~ 15304494 (+)
tshba tshb,LOC108271948 other upstream 2648982 13490161 ~ 13506004 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 2822809 13265788 ~ 13332177 (+)
mustn1a LOC108272082,LOC108439813 other downstream 25927 16181171 ~ 16182309 (+)
tomm6 tomm6 other downstream 243001 16398245 ~ 16401111 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 2619526 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 2662158 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 2777439 18932683 ~ 18948737 (+)

Expression


Co-expression Network