G28325


Basic Information

Item Value
gene id G28325
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16181075 ~ 16181718 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33409
TTCTCTTTGGTgtgacgtacacacacacacacacagcctgttaTTGTACTGACAGGGTCATCGCTCCACTCACCACATTCCTCCATCACTTCAAAGGTCTTACTCTTCACCGGAGTCCCGGATGCCAGCTTATCCCTTGCTTGAATCAGGTCCTCATTCCTCACCTCCGGCCTCTTTATCttcccctcctctccctcctcctgtAGCTgACATGTTCAGGATCTTTCAGCTGGTGCTCAAATCCAAACTTTACTGCAGCCTTGCAGCTTTGGTTGGAGTCCTCCCTTGAACTTGatgtttccttccttcctttaaacacacacaatcccaGTGGACCATAATTGTGCTGGCCAAAGCATGAGTCAGTCCATtactcctccctcctctctcttttcgCTCAGTTCACATGGTGATGTATATGATGGCTTTTCATTCTAACTGGTTCATACGGCTGTGAAAAATAAACTGATGTGCCTTTAGGTATTTTGAAGCAGTGTTCCTGGATCTGTTTAtaactgtgtgtgcacttgtgatCTTGTTGGGTCAGCATGTGTACTCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33409 True 561 lncRNA 0.47 2 16181075 16181718

Neighbor

gene id symbol gene type direction distance location
c2h1orf74 c11h1orf74 coding downstream 5963 16172670 ~ 16175112 (-)
patz1 patz1 coding downstream 61227 16106829 ~ 16119848 (-)
tgfa LOC108271731 coding downstream 97297 16074046 ~ 16083778 (-)
entpd8 entpd8 coding downstream 124388 16047993 ~ 16056687 (-)
fkbp5 fkbp5,LOC108271732,LOC108413698,LOC107712109,LOC107673486,LOC107667344 coding downstream 156606 16011998 ~ 16024469 (-)
ruvbl1 ruvbl1,LOC107721190,LOC107568195,LOC107667375,LOC107673590 coding upstream 799 16182517 ~ 16187880 (-)
gata2b gata2 coding upstream 20670 16202388 ~ 16209962 (-)
si:ch211-157b11.8 LOC108271679 coding upstream 39447 16221165 ~ 16225200 (-)
slc26a6l LOC108271864,LOC108440479 coding upstream 90150 16271868 ~ 16281761 (-)
iho1 ccdc36 coding upstream 106453 16288171 ~ 16299906 (-)
G28278 NA non-coding downstream 58126 16122729 ~ 16122949 (-)
G28256 NA non-coding downstream 135400 16035833 ~ 16045675 (-)
G28258 NA non-coding downstream 141282 16037983 ~ 16039793 (-)
G28232 NA non-coding downstream 247217 15929041 ~ 15933858 (-)
G28207 NA non-coding downstream 392922 15786853 ~ 15788153 (-)
G28331 NA non-coding upstream 14856 16196574 ~ 16196867 (-)
G28376 NA non-coding upstream 77140 16258858 ~ 16259163 (-)
G28375 p4htm non-coding upstream 77718 16259436 ~ 16260312 (-)
G28383 NA non-coding upstream 81896 16263614 ~ 16264242 (-)
G28384 NA non-coding upstream 83206 16264924 ~ 16265160 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 45360 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 685866 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 720074 15456635 ~ 15461001 (-)
G27843 NA other downstream 882056 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1305085 14872948 ~ 14875990 (-)
G29158 NA other upstream 1091237 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1290612 17472330 ~ 17529315 (-)
G29263 NA other upstream 1767439 17949157 ~ 17949718 (-)
G29279 NA other upstream 1889269 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 1966510 18148228 ~ 18195628 (-)

Expression


Co-expression Network