G28361


Basic Information

Item Value
gene id G28361
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16268709 ~ 16269552 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33449
tggcaccttttgtttgaatccaaccatttttcaagtgatcaaaaatattggaacatgtgactgacaggtgtttcttgttgcccaggtgtgtcctgttagattgattgtttaaacagttaatgtCTATGAATATGtattcttggtttgagccctgggttttgcctgtgaagacttgttgttaaaaaggataaatcaACATGAAGGCCGGAGAGCTGTATaagggagaaaagcaagccattttgaagctgagaaaaaagggaaaatcgatcagacccattgcacaagcactgggcatagccaatacaacaatttactCTGtccttctggaacaggctcactaatctttattgatgatgtaactcatgatcgTGGCAGCAGGATGAAGTCTGCAGAAACATTCAGTCTGCGagattacagagaaatgcatccaatctaattgggaacAACCTCATCATGCTGCAAaacaatgacacaaaacacactgcaaagaCAACAatggacttcatcaggggaaaaaagtggaaggttttagactggccaagtcaatcaccagaccttaacccaactgagcatgcaccTCACATCCTGGAGAATGAAGagagaaacccccaaagcaaACAGCtaaaagaagctgcagtacaagcctggagcatcagaaaaaaggaaaaatgcaacagtttggtgatgtcagtggctCGCCATGCAGTTATGCAACCAAATatcaagtgttatttactttaatttattttaagactgTCTGTtccttttgctcacctaaaaattgggtggtctgccaccaaggtgccatgttctaagttgtttaacacatctagatgtaaatatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33449 True 844 lncRNA 0.41 1 16268709 16269552

Neighbor

gene id symbol gene type direction distance location
p4htm p4htm,LOC108440486 coding upstream 130 16259432 ~ 16268579 (+)
myhb myhb,LOC108271865,LOC108440470,LOC107721187,LOC108254796,LOC107568178,LOC108443910,LOC107667337 coding upstream 10278 16245307 ~ 16258431 (+)
arpc4 arpc4,LOC103358720,LOC107721188,LOC100696600 coding upstream 28767 16234025 ~ 16239942 (+)
LOC113530143 LOC100304607,LOC107667340 coding upstream 35371 16231892 ~ 16233338 (+)
LOC113527941 rab7a,LOC108271868,LOC106518505,LOC101061812,LOC105017315,LOC108254780 coding upstream 37927 16227005 ~ 16230782 (+)
kbtbd12 kbtbd12,LOC107721181,LOC107712091,LOC107673613,LOC107667403 coding downstream 14401 16283953 ~ 16288642 (+)
akap14 akap14 coding downstream 31716 16301268 ~ 16302456 (+)
c2h1orf159 c11h1orf159 coding downstream 36509 16306061 ~ 16313244 (+)
LOC113527565 NA coding downstream 47556 16317108 ~ 16320572 (+)
si:ch211-157b11.14 LOC108271613 coding downstream 51448 16321000 ~ 16328152 (+)
G28287 NA non-coding upstream 113465 16154986 ~ 16155244 (+)
G28162 NA non-coding upstream 145569 16122896 ~ 16123140 (+)
G28160 NA non-coding upstream 146377 16121977 ~ 16122332 (+)
G28156 NA non-coding upstream 162437 16106043 ~ 16106272 (+)
G28150 NA non-coding upstream 192159 16073222 ~ 16076550 (+)
G28402 LOC108271943 non-coding downstream 63899 16333451 ~ 16334652 (+)
G28404 NA non-coding downstream 66640 16336192 ~ 16336694 (+)
G28405 NA non-coding downstream 76093 16345645 ~ 16346086 (+)
G28410 NA non-coding downstream 88530 16358082 ~ 16361347 (+)
G28446 NA non-coding downstream 166569 16436121 ~ 16440771 (+)
mustn1a LOC108272082,LOC108439813 other upstream 86400 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 165461 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 478265 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 964215 15278822 ~ 15304494 (+)
tshba tshb,LOC108271948 other upstream 2762705 13490161 ~ 13506004 (+)
tomm6 tomm6 other downstream 128693 16398245 ~ 16401111 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 2505218 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 2547850 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 2663131 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 2791545 19061097 ~ 19087211 (+)

Expression


Co-expression Network