G28376


Basic Information

Item Value
gene id G28376
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16258858 ~ 16259163 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33464
GTTGGGGTAGTTTATATTTGGGATTTGAGGTGAAGTGTGAGAAGAGGGAATCTACCTAACCTAGCCGCTTACATTAGTACCACACTAACTAATTGTCAGTGGTTATCAGCTTTGTGGTTGTAGGATGTGATTATGTAAAGGCATGATCAAGATAAACTTAGAAAGGTTCAAGATGTTACTTTAAGCAGACGACTAGTTTATCCTCAGCTTCCTTCAAACACTTGGCTGGAGATAACATGTCTAAATCAGTAACAGTTAAGCTGGACTGTGGACAGAGTGAGCACAAAGACTTAATCACTAGAGACA

Function

GO:

id name namespace
GO:0038003 opioid receptor signaling pathway biological_process
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU33464 True 306 lncRNA 0.44 1 16258858 16259163

Neighbor

gene id symbol gene type direction distance location
si:ch211-157b11.8 LOC108271679 coding downstream 33658 16221165 ~ 16225200 (-)
gata2b gata2 coding downstream 48896 16202388 ~ 16209962 (-)
ruvbl1 ruvbl1,LOC107721190,LOC107568195,LOC107667375,LOC107673590 coding downstream 70978 16182517 ~ 16187880 (-)
c2h1orf74 c11h1orf74 coding downstream 83746 16172670 ~ 16175112 (-)
patz1 patz1 coding downstream 139010 16106829 ~ 16119848 (-)
slc26a6l LOC108271864,LOC108440479 coding upstream 12705 16271868 ~ 16281761 (-)
iho1 ccdc36 coding upstream 29008 16288171 ~ 16299906 (-)
rereb LOC108271943,LOC108440553,LOC107721179,LOC107584416 coding upstream 68708 16327871 ~ 16346280 (-)
eno1b eno1b,LOC108271510,LOC108440571,LOC107721178,LOC107568188,LOC107712086 coding upstream 87422 16346585 ~ 16354141 (-)
frs3 frs3,LOC107667350,LOC107584505,LOC107568202,LOC107673473,LOC107712068 coding upstream 113619 16372782 ~ 16386220 (-)
G28331 NA non-coding downstream 61991 16196574 ~ 16196867 (-)
G28325 NA non-coding downstream 77140 16181075 ~ 16181718 (-)
G28278 NA non-coding downstream 135909 16122729 ~ 16122949 (-)
G28256 NA non-coding downstream 213183 16035833 ~ 16045675 (-)
G28258 NA non-coding downstream 219065 16037983 ~ 16039793 (-)
G28375 p4htm non-coding upstream 273 16259436 ~ 16260312 (-)
G28383 NA non-coding upstream 4451 16263614 ~ 16264242 (-)
G28384 NA non-coding upstream 5761 16264924 ~ 16265160 (-)
G28385 NA non-coding upstream 7393 16266556 ~ 16266755 (-)
G28515 NA non-coding upstream 69945 16329108 ~ 16329421 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 123143 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 763649 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 797857 15456635 ~ 15461001 (-)
G27843 NA other downstream 959839 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1382868 14872948 ~ 14875990 (-)
G29158 NA other upstream 1013792 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1213167 17472330 ~ 17529315 (-)
G29263 NA other upstream 1689994 17949157 ~ 17949718 (-)
G29279 NA other upstream 1811824 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 1889065 18148228 ~ 18195628 (-)

Expression


Co-expression Network