G28402 (LOC108271943)


Basic Information

Item Value
gene id G28402
gene name LOC108271943
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16333451 ~ 16334652 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33490
GGCTGACTGGCTTGCATGGCTGGGGATGTTAACCACAGTGGGTTCAGGTGAAGGAGTCCTGCGTGGAGGAGGAGGCGGGCTTTCACAGTTCTCATCTTCATCTACAGGCTCCTGTTTGATGGTCACGTGTGCTGGCCCAGCAGGTGCACTTGGTGCAGAGGAAGTGGATGGCTGTGGGCCCGGGACTGCAGCAGAAGATGAGGACAGAGTGAACGGAGCGGTGGATTCAGGCATAGGACGGTTCTGGGAGAGCAAAGCGTGAGGACAGGCTGAGGCTGGAGGGAGGCTGGTAACATGACTTTTGCCTTGATGGTTCTGGGACTGAGTCAGCACGGGCAGTTGAGGCTGAGGATGAGGCTGGGGCATAATGTGCAAGGGAGGAGGTTGAGAGCAGGGAGGGTGCTGAGCAGGTAAAGAGGCCAGAGGCTTTAATGCTGGAGGTGGAGGCAGATTGGGGTGGATCTGCAGAAATGGTGGAGGAGCAGGAATTGGAGGAATTGGCTTGTGAGAGGAGGGGATAGGGGTAGTTGGTGGGGGCttgatttgagatgcagatGTCAGTGGCAGAGCAGAATGGAGGCTATCCCGCTGAAGTTGAAGGGGCTTAGGACCAAATCCATGAGGATGATGAGCGCTGGATGGATGATTCTGAACCTGACTTGGATGGTGGTGATAATGAGGGGCAGATGGAGGGAAAGACTGGCCCTGCCCTGGACCTGGTCCCTGGAAAGAGGAGAGCCCCGAGGGAGGCTGGGATGTGGGAGGAGCCTCCTGACCCCTTTGACTCCTCCTATGAGCAATGACAGATGGATCATCTTGGGTAATGTCCACAGGGACGATGACCCGTGAAgtggtggtggtgctgctgGTGGTAGTGATGGTAGAAACTCCAGGTGAAGATACACTTGATTGTAAGGGTTGAGGTGGTAGAGCAGGTGGGGTCTGAGAGGGAGCTGGAGGAGCAGCTGCTATAGTGTTAACAGGTTGTTGTGATTGGCTCTGTGGCCCagctggaggtggaggtggaggaacAGGTGAGTCTAAATCACTCTCATTGGCTGGCAATGGGCTGGCGAGGCTTGGGGAAGAGCTGCGGTTGTCCTGGTCTATATCTTTAGTATCACTGCTGCCATCCTCATTAGCACTGCGGCTGTCTGAGCTTTCACCTTCACCCTCTCCTTCTGACTGGGAGTCTGGAACCT

Function

NR:

description
PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33490 True 1202 lncRNA 0.38 1 16333451 16334652

Neighbor

gene id symbol gene type direction distance location
si:ch211-157b11.14 LOC108271613 coding upstream 5299 16321000 ~ 16328152 (+)
LOC113527565 NA coding upstream 12879 16317108 ~ 16320572 (+)
c2h1orf159 c11h1orf159 coding upstream 20207 16306061 ~ 16313244 (+)
akap14 akap14 coding upstream 30995 16301268 ~ 16302456 (+)
kbtbd12 kbtbd12,LOC107721181,LOC107712091,LOC107673613,LOC107667403 coding upstream 44809 16283953 ~ 16288642 (+)
ppil1 ppil1,LOC107667353,LOC107673584 coding downstream 29019 16363671 ~ 16365937 (+)
tspo tspo,LOC107721166,LOC107568174,LOC107667354 coding downstream 56760 16391412 ~ 16394007 (+)
LOC113544464 LOC100335019,LOC108438034,LOC103026398,LOC100706528,LOC101066223 coding downstream 125749 16460401 ~ 16463536 (+)
lrrc41 lrrc41 coding downstream 130291 16464943 ~ 16475146 (+)
hyi hyi coding downstream 719480 17054132 ~ 17066099 (+)
G28361 NA non-coding upstream 63899 16268709 ~ 16269552 (+)
G28287 NA non-coding upstream 178207 16154986 ~ 16155244 (+)
G28162 NA non-coding upstream 210311 16122896 ~ 16123140 (+)
G28160 NA non-coding upstream 211119 16121977 ~ 16122332 (+)
G28156 NA non-coding upstream 227179 16106043 ~ 16106272 (+)
G28404 NA non-coding downstream 1540 16336192 ~ 16336694 (+)
G28405 NA non-coding downstream 10993 16345645 ~ 16346086 (+)
G28410 NA non-coding downstream 23430 16358082 ~ 16361347 (+)
G28446 NA non-coding downstream 101469 16436121 ~ 16440771 (+)
LOC117599087 NA non-coding downstream 154426 16489078 ~ 16494312 (+)
mustn1a LOC108272082,LOC108439813 other upstream 151142 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 230203 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 543007 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 1028957 15278822 ~ 15304494 (+)
tshba tshb,LOC108271948 other upstream 2827447 13490161 ~ 13506004 (+)
tomm6 tomm6 other downstream 63593 16398245 ~ 16401111 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 2440118 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 2482750 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 2598031 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 2726445 19061097 ~ 19087211 (+)

Expression


Co-expression Network