tomm6 (tomm6)


Basic Information

Item Value
gene id tomm6
gene name tomm6
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16398245 ~ 16401111 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33518
GGGACAAACCAAATCGCGTTTTTGCGTTTAGTAGAAACGCTGAGACGAGTGCACATTTTGTCCCAAACGTGTTTCCGTAAGCTCCGAGCTCGCCTCATGaaatcacCAGGGAAGATGGCGGGTGCTGGAAAGAAAAGCGAAGCAGGAGCTCCAGGGGTTGTGGGATGGATCAGCTCCGCATATCGATTTGCGACCGACAGGAATGATTTCAGAAGGAATCTTCTGGTGAATCTAGGTTTGTTTGCAGCAGGAGTTTGGGTGGCGAGGAATTTGTCAGACTTTGACTTGATGTCACCTCAACCAGTCACATAGTCCTGGCCAAATCATGGGCTTTTGCAGGAGGAGAGGACCAATTTCTTCTGAATAAGAACAGAGCTTTCTACCAGAGGCAATGATGGGGCAAGATCAGTGGACACTGAATAGAAAACAGCCAATGAAGCATTGTTAAAGCTCTagtacacactttttaaaaaaaagaaaaacagtgaacaGCTGACTTTATTACAAActttatttactataaataatgtttcaTGTATAACTTAAAGTTCACAATCTATATGATCTGACGTTCTAGCAGGTTTAGTCATACAAGTGGATTCAAAAAAGTT
>TU33519
GGGACAAACCAAATCGCGTTTTTGCGTTTAGTAGAAACGCTGAGACGAGTGCACATTTTGTCCCAAACGTGTTTCCGTAAGCTCCGAGCTCGCCTCATGGTGTGTAGAAATAATCAACGGTTTAGTATAACTATAGCTACGTCTGTGAATGTTTTCCTTTTGAAATTGCTTGTCttaatttttgtcttattttaaaagaaatcacCAGGGAAGATGGCGGGTGCTGGAAAGAAAAGCGAAGCAGGAGCTCCAGGGGTTGTGGGATGGATCAGCTCCGCATATCGATTTGCGACCGACAGGAATGATTTCAGAAGGAATCTTCTGGTGAATCTAGGTTTGTTTGCAGCAGGAGTTTGGGTGGCGAGGAATTTGTCAGACTTTGACTTGATGTCACCTCAACCAGTCACATAGTCCTGGCCAAATCATGGGCTTTTGCAGGAGGAGAGGACCAATTTCTTCTGAATAAGAACAGAGCTTTCTACCAGAGGCAATGATGGGGCAAGATCAGTGGACACTGAATAGAAAACAGCCAATGAAGCATTGTTAAAGCTCTagtacacactttttaaaaaaaagaaaaacagtgaacaGCTGACTTTATTACAAActttatttactataaataatgtttcaTGTATAACTTAAAGTTCACAATCTATATGATCTGACGTTCTAGCAGGTTTAGTCATACAAGTGGATTCAAAAAAGTT
>TU33520
GGGACAAACCAAATCGCGTTTTTGCGTTTAGTAGAAACGCTGAGACGAGTGCACATTTTGTCCCAAACGTGTTTCCGTAAGCTCCGAGCTCGCCTCATGaaatcacCAGGGAAGATGGCGGGTGCTGGAAAGAAAAGCGAAGCAGGAGCTCCAGGGGTTGTGGGATGGATCAGCTCCGCATATCGATTTGCGACCGACAGGAATGATTTCAGAAGGAATCTTCTGGTGAATCTAGGTTTGTTTGCAGCAGGAGTTTGGGTGGCGAGGAATTTGTCAGACTTTGACTTGATGTCACCTCAACCAGTCACATAGTCCTGGCCAAATCATGGGCTTTTGCAGGAGGAGAGGACCAATTTCTTCTGAATAAGAACAGAGCTTTCTACCAGAGGCAATGATGGGGCAAGATCAGTGGACACTGAATAGAAAACAGCCAATGAAGCATTGTTAAAGCTCTagtacacactttttaaaaaaaagaaaaacagtgaacaGCTGACTTTATTACAAActttatttactataaataatgtttcaTGTATAACTTAAAGTTCACAATCTATATGATCTGACGTTCTAGCAGGTTTAGTCATACAAGTGGATTCAAAAAAGTTACATATAATACttaataaaagtgtttaaacaTTCTTGGTCTCTGT
>TU33523
TGTTTTCACCCTCTCTGAATGCACTGGCCACCTTTTGCCGTAAAAACGTCCCCAAATCTCGACCTTTTTTCGATTCGTCTCTCGGCCATTCTTCACACAACTTGAGAAAGCGACGGTACCTGGTGGCGGCCATTTTCAGACTTGGGGAAAGGCAGGACCCACATTTAAAGTCAGGATGCCGCACTGGGACAAACCAAATCGCGTTTTTGCGTTTAGTAGAAACGCTGAGACGAGTGCACATTTTGTCCCAAACGTGTTTCCGTAAGCTCCGAGCTCGCCTCATGGTGTGTAGAAATAATCAACGGTTTAGTATAACTATAGCTACGTCTGTGAATGTTTTCCTTTTGAAATTGCTTGTCttaatttttgtcttattttaaaagaaatcacCAGGGAAGATGGCGGGTGCTGGAAAGAAAAGCGAAGCAGGAGCTCCAGGGGTTGTGGGATGGATCAGCTCCGCATATCGATTTGCGACCGACAGGAATGATTTCAGAAGGAATCTTCTGGTGAATCTAGGTTTGTTTGCAGCAGGAGTTTGGGTGGCGAGGAATTTGTCAGACTTTGACTTGATGTCACCTCAACCAGTCACATAGTCCTGGCCAAATCATGGGCTTTTGCAGGAGGAGAGGACCAATTTCTTCTGAATAAGAACAGAGCTTTCTACCAGAGGCAATGATGGGGCAAGATCAGTGGACACTGAATAGAAAACAGCCAATGAAGCATTGTTAAAGCTCTagtacacactttttaaaaaaaagaaaaacagtgaacaGCTGACTTTATTACAAActttatttactataaataatgtttcaTGTATAACTTAAAGTTCACAATCTATATGATCTGACGTTCTAGCAGGTTTAGTCATACAAGTGGATTCAAAAAAGTT
>TU33525
GGGACAAACCAAATCGCGTTTTTGCGTTTAGTAGAAACGCTGAGACGAGTGCACATTTTGTCCCAAACGTGTTTCCGTAAGCTCCGAGCTCGCCTCATGGTGTGTAGAAATAATCAACGGTTTAGTATAACTATAGCTACGTCTGTGAATGTTTTCCTTTTGAAATTGCTTGTCttaatttttgtcttattttaaaagaaatcacCAGGGAAGATGGCGGGTGCTGGAAAGAAAAGCGAAGCAGGAGCTCCAGGGGTTGTGGGATGGATCAGCTCCGCATATCGATTTGCGACCGACAGGAATGATTTCAGAAGGAATCTTCTGGTGAATCTAGGTTTGTTTGCAGCAGGAGTTTGGGTGGCGAGGAATTTGTCAGACTTTGACTTGATGTCACCTCAACCAGTCACATAGTCCTGGCCAAATCATGGGCTTTTGCAGGAGGAGAGGACCAATTTCTTCTGAATAAGAACAGAGCTTTCTACCAGAGGCAATGATGGGGCAAGATCAGTGGACACTGAATAGAAAACAGCCAATGAAGCATTGTTAAAGCTCTagtacacactttttaaaaaaaagaaaaacagtgaacaGCTGACTTTATTACAAActttatttactataaataatgtttcaTGTATAACTTAAAGTTCACAATCTATATGATCTGACGTTCTAGCAGGTTTAGTCATACAAGTGGATTCAAAAAAGTTACATATAATACttaataaaagtgtttaaacaTTCTTGGTCTCTGT
>XM_026938693.2
TTAAAGTCAGGATGCCGCACTGGGACAAACCAAATCGCGTTTTTGCGTTTAGTAGAAACGCTGAGACGAGTGCACATTTTGTCCCAAACGTGTTTCCGTAAGCTCCGAGCTCGCCTCATGaaatcacCAGGGAAGATGGCGGGTGCTGGAAAGAAAAGCGAAGCAGGAGCTCCAGGGGTTGTGGGATGGATCAGCTCCGCATATCGATTTGCGACCGACAGGAATGATTTCAGAAGGAATCTTCTGGTGAATCTAGGTTTGTTTGCAGCAGGAGTTTGGGTGGCGAGGAATTTGTCAGACTTTGACTTGATGTCACCTCAACCAGTCACATAGTCCTGGCCAAATCATGGGCTTTTGCAGGAGGAGAGGACCAATTTCTTCTGAATAAGAACAGAGCTTTCTACCAGAGGCAATGATGGGGCAAGATCAGTGGACACTGAATAGAAAACAGCCAATGAAGCATTGTTAAAGCTCTagtacacactttttaaaaaaaagaaaaacagtgaacaGCTGACTTTATTACAAActttatttactataaataatgtttcaTGTATAACTTAAAGTTCACAATCTATATGATCTGACGTTCTAGCAGGTTTAGTCATACAAGTGGATTCAAAAAAGTTACATATAATACttaataaaagtgtttaaacaTT

Function

symbol description
tomm6 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Orthologous to human TOMM6 (translocase of outer mitochondrial membrane 6).

NR:

description
PREDICTED: mitochondrial import receptor subunit TOM6 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33518 False 611 lncRNA 0.42 4 16398430 16401066
TU33519 False 710 lncRNA 0.40 3 16398430 16401066
TU33520 False 656 lncRNA 0.41 4 16398430 16401111
TU33523 True 895 lncRNA 0.42 3 16398245 16401066
TU33525 False 755 lncRNA 0.48 3 16398430 16401111
XM_026938693.2 False 665 mRNA 0.41 4 16398409 16401099

Neighbor

gene id symbol gene type direction distance location
tspo tspo,LOC107721166,LOC107568174,LOC107667354 coding upstream 4238 16391412 ~ 16394007 (+)
ppil1 ppil1,LOC107667353,LOC107673584 coding upstream 32308 16363671 ~ 16365937 (+)
si:ch211-157b11.14 LOC108271613 coding upstream 70093 16321000 ~ 16328152 (+)
LOC113527565 NA coding upstream 77673 16317108 ~ 16320572 (+)
c2h1orf159 c11h1orf159 coding upstream 85001 16306061 ~ 16313244 (+)
LOC113544464 LOC100335019,LOC108438034,LOC103026398,LOC100706528,LOC101066223 coding downstream 59290 16460401 ~ 16463536 (+)
lrrc41 lrrc41 coding downstream 63832 16464943 ~ 16475146 (+)
hyi hyi coding downstream 653021 17054132 ~ 17066099 (+)
LOC117595909 NA coding downstream 778132 17179243 ~ 17184683 (+)
glulb LOC108272186,LOC107733907,LOC107757425,LOC107555380,LOC108437688,LOC107704001,LOC107660462 coding downstream 991218 17392329 ~ 17396139 (+)
G28410 NA non-coding upstream 36898 16358082 ~ 16361347 (+)
G28405 NA non-coding upstream 52159 16345645 ~ 16346086 (+)
G28404 NA non-coding upstream 61551 16336192 ~ 16336694 (+)
G28402 LOC108271943 non-coding upstream 63593 16333451 ~ 16334652 (+)
G28361 NA non-coding upstream 128693 16268709 ~ 16269552 (+)
G28446 NA non-coding downstream 35010 16436121 ~ 16440771 (+)
LOC117599087 NA non-coding downstream 87967 16489078 ~ 16494312 (+)
G28574 NA non-coding downstream 132764 16533875 ~ 16535345 (+)
G28676 ptprf non-coding downstream 328103 16729214 ~ 16731205 (+)
LOC113524191 NA non-coding downstream 441133 16842244 ~ 16843385 (+)
mustn1a LOC108272082,LOC108439813 other upstream 215936 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 294997 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 607801 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 1093751 15278822 ~ 15304494 (+)
tshba tshb,LOC108271948 other upstream 2892241 13490161 ~ 13506004 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 2373659 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 2416291 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 2531572 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 2659986 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 3133234 19534345 ~ 19537197 (+)

Expression


Co-expression Network