G28537


Basic Information

Item Value
gene id G28537
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16462102 ~ 16489915 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33656
TCATGGTcatataataaatagaaaatagaaaatctaTTACACTATGCCTAGAAAATCTTACAGTATGTCAGAAACTACACCCTATTCACTGTGCATCATTTCATGGAAGCCATCCTGTGCTCATAAAATCTCACACTTCTCTGCAATAGGTTAGTGTCTGAATGATGTACTCTAGCAGGTACCAGATATCCAAAGTGTACTTTGGATTAGATTTGGAGGCAAAAGAAAGTAATAGACCACAAATGCAGCAGCACAGCAATCTTCTCCAAAAGTCTTTTCTTCTGCATGTGATCTTATGCAGGGACTTGACAGGGAATTCTCAGCTACTCTGTGGTTGTTTGAATGTTCACTTCTATCAACATCGACACTGGTTGTAGAATAGTATTTAAGTCAGAGATGTACACATTACAACATTTTATTCACAAATCATCATAAGCAGATTGGACACACTGCTAGGTACAGTACAGCGGCtcggttggaaaaaaaaatgtcagcaatCACCTCACTGCCTATAAATAACAACTGTATTAGTGATCCTGACAGGACAGCCATGAAGAAGCAGTGATGAGGATCTGAGGAGCTTCATTTGACCGAGTGGAAGAGCTTGTGGGCCcaCGCAGTGATCCCGTGCATGCAGGAAATCGAAAAGCTCCTCAGTGCAGTCCTCTTCAGTCGACCGTGAGCCCACCCTCGTCTCGCACATCTCGAGTTTCTCATGTGCGTGGACGCAGTGCTCTGTCTCCTCACATTTCTGCCTGATTGCCTCTAACGGGTCCTACATTcaca
>TU33657
gtgacttgtggccaagtatggtgacccatactcggaatttgtgctctgcatttaacccatccaagtgcacacacacagtagtgaacacacacacaccgtgaacacacacccggagcagtgggcagcctttttttttcttttttttttttACACATTACAACATTTTATTCACAAATCATCATAAGCAGATTGGACACACTGCTAGGTACAGTACAGCGGCtcggttggaaaaaaaaatgtcagcaatCACCTCACTGCCTATAAATAACAACTGTATTAGTGATCCTGACAGGACAGCCATGAAGAAGCAGTGATGAGGATCTGAGGAGCTTCATTTGACCGAGTGGAAGAGCTTGTGGGCCcaCGCAGTGATCCCGTGCATGCAGGAAATCGAAAAGCTCCTCAGTGCAGTCCTCTTCAGTCGACCGTGAGCCCACCCTCGTCTCGCACATCTCGAGTTTCTCATGTGCGTGGACGCAGTGCTCTGTCTCCTCACATTTCTGCCTGATTGCCTCTAACGGGTCCTACATTcaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33656 True 786 lncRNA 0.43 2 16462102 16463933
TU33657 False 535 lncRNA 0.48 3 16462102 16489915

Neighbor

gene id symbol gene type direction distance location
LOC113531657 LOC108272136 coding downstream 7536 16436840 ~ 16454566 (-)
prkcda LOC108271968,LOC108440644,LOC107582675,LOC103030273,LOC107667398,LOC107721176,LOC107673500,LOC107712078 coding downstream 32006 16419260 ~ 16430096 (-)
ddi2 ddi2,LOC102794950,LOC107721177,LOC107673502,LOC107667352 coding downstream 45283 16406576 ~ 16416819 (-)
si:ch73-15b2.5 LOC108272055 coding downstream 55620 16400949 ~ 16406482 (-)
LOC113541386 cf125,uqcc2,LOC108440614,LOC107580205,LOC107667355,LOC106565356 coding downstream 63701 16394241 ~ 16398401 (-)
LOC113523777 artn coding upstream 1766 16491681 ~ 16519158 (-)
st3gal3a st3gal3,LOC108412691 coding upstream 44853 16534768 ~ 16586246 (-)
kdm4aa kdm4aa,kdm4a,LOC108412690 coding upstream 99432 16589347 ~ 16622597 (-)
ptprfa ptprf,ptprfa,LOC107709086 coding upstream 135739 16625654 ~ 16832868 (-)
szt2 szt2 coding upstream 576440 17066355 ~ 17169352 (-)
G28508 NA non-coding downstream 102581 16358139 ~ 16359521 (-)
G28515 NA non-coding downstream 132681 16329108 ~ 16329421 (-)
G28385 NA non-coding downstream 195347 16266556 ~ 16266755 (-)
G28384 NA non-coding downstream 196942 16264924 ~ 16265160 (-)
G28383 NA non-coding downstream 197860 16263614 ~ 16264242 (-)
G28779 NA non-coding upstream 80875 16570790 ~ 16571524 (-)
G29119 NA non-coding upstream 564173 17054088 ~ 17054656 (-)
G29167 LOC108272186 non-coding upstream 903543 17393458 ~ 17394467 (-)
G29166 LOC108437688,LOC108272186,LOC103143039,LOC105011759,LOC105916686 non-coding upstream 904851 17394766 ~ 17396199 (-)
LOC113528975 NA non-coding upstream 933956 17423871 ~ 17429778 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 326387 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 966893 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 1001101 15456635 ~ 15461001 (-)
G27843 NA other downstream 1163083 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1586112 14872948 ~ 14875990 (-)
G29158 NA other upstream 783040 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 982415 17472330 ~ 17529315 (-)
G29263 NA other upstream 1459242 17949157 ~ 17949718 (-)
G29279 NA other upstream 1581072 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 1658313 18148228 ~ 18195628 (-)

Expression


Co-expression Network