G28574


Basic Information

Item Value
gene id G28574
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16533875 ~ 16535345 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33701
ACAGAATCACAGGCTGAGTGAGAAAAACATGGTGATTtcaacactgtaacacaatcCCCTTTAGTCctgctaatatatatatatatatatatatagcagaaCACAATGGGGAAAATCAGTCCTTATCATCTGTGCTGTAACACTAAAGACTGCAGAGAAAGCAGCCCAAGTTTGAGGTGAACACCATTAAAGCTCTGTGAAGTGAACTGAAGAATGTAACTTACACAGTGCATacataaatactaaaaaaaaaaaacaaaaatcaaaaaacagaCACTCGCTTTCGTGTACACATAACTTTAAGTGTGGACGGCTACAGGGAAGTGTGAACTGGACATGATGTTTCTAATGCTATAATGAACCCCAGTGAGTCAGTACAAATTTTAACTGtgttgaattttatttacactatttaATGACCTTATTcgatttaaaaaattttaatgtatAACTGAAGCTGTCTTAAGTGACCTTACACAATAAACTGAAGGTCACCTGAAATAAAAGACCTCAGTATAGTTTCAAAATGTACCACTCTCACCACAGTCCATCAAACTGATTTATGGAAACTCAAGTGCAAATTTCTTGCTTCTCTGATATGACAGAATTGAACATGTTTAAATATACCCACTCATTCAAAGCTGATTCTATACCTAGTCTAGGCATCAATTTAATAGTGGTACAATTAACACTcacccatttttaaaaaaatcagtataaCAGTGTTTAACTAGCACATGCTATTGTTTCTCTCGTTTCTACATGTGCTGTGCCTCATTTCACTTGTGAAGCAGCCATCCAGTCAGgatgaatttaatatttaatagaagGTCAGAAAATGatcatgtaaaaatgaattatgaCTGTTTTTGTAACAGAAATGATTAGATGGACTTCAGAGAAAAAAGTAAATTCAATACATCATATGAGATCTTTAAAATGATGTAGTGTGCATAATGCATCAGAATGTATCTGTTTCACTGCTGTGGTACAGCTGTCACTTAGTGTCTACAGCCGTGGTGCTAATGCTGTTTGTGGTCCCTGCAGCCGTCAATACTTAATGTCACTAGTAATACTATTTAAATACAAAGGCATGTCCCTCACGCTgcatttaaaaccattttaaaaaagggAGTTTCTCAAAGACTGATATAGCGTAAAAGCACGCCTTTTTATGTCTTACATACTAGCATGTTCTCAGACCGGAGCGTCAAGACTTGCGATGGGTGGAGTCTTCCATTAACCATGTTAATGCGTGAAGTCCGCATACTCAGGTGCTTGGTAAAAGCGAGTCAGCAATGGCATTTCCATAtttgtgcaggtgtgtgagagatgcTCAGATTCCGTAGGTCAGATCCTGAATTACACCGGCCGTCACCAACTTCCGCAGAAACTCCTTTTCTTTCGGTATGTTGTGTGTCCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33701 True 1425 lncRNA 0.37 2 16533875 16535345

Neighbor

gene id symbol gene type direction distance location
lrrc41 lrrc41 coding upstream 58729 16464943 ~ 16475146 (+)
LOC113544464 LOC100335019,LOC108438034,LOC103026398,LOC100706528,LOC101066223 coding upstream 70339 16460401 ~ 16463536 (+)
tspo tspo,LOC107721166,LOC107568174,LOC107667354 coding upstream 139868 16391412 ~ 16394007 (+)
ppil1 ppil1,LOC107667353,LOC107673584 coding upstream 167938 16363671 ~ 16365937 (+)
si:ch211-157b11.14 LOC108271613 coding upstream 205723 16321000 ~ 16328152 (+)
hyi hyi coding downstream 518787 17054132 ~ 17066099 (+)
LOC117595909 NA coding downstream 643898 17179243 ~ 17184683 (+)
glulb LOC108272186,LOC107733907,LOC107757425,LOC107555380,LOC108437688,LOC107704001,LOC107660462 coding downstream 856984 17392329 ~ 17396139 (+)
znf648 NA coding downstream 898003 17433348 ~ 17437899 (+)
gadd45ab gadd45a,gadd45ab,LOC108272203,LOC107670797,LOC107555372,LOC107678351 coding downstream 930236 17465581 ~ 17468158 (+)
LOC117599087 NA non-coding upstream 39563 16489078 ~ 16494312 (+)
G28446 NA non-coding upstream 93104 16436121 ~ 16440771 (+)
G28410 NA non-coding upstream 172528 16358082 ~ 16361347 (+)
G28405 NA non-coding upstream 187789 16345645 ~ 16346086 (+)
G28404 NA non-coding upstream 197181 16336192 ~ 16336694 (+)
G28676 ptprf non-coding downstream 193869 16729214 ~ 16731205 (+)
LOC113524191 NA non-coding downstream 306899 16842244 ~ 16843385 (+)
G28865 NA non-coding downstream 517585 17052930 ~ 17053746 (+)
G28889 NA non-coding downstream 564881 17100226 ~ 17137850 (+)
G28997 NA non-coding downstream 888476 17423821 ~ 17426323 (+)
tomm6 tomm6 other upstream 132764 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 351566 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 430627 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 743431 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 1229381 15278822 ~ 15304494 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 2239425 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 2282057 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 2397338 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 2525752 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 2999000 19534345 ~ 19537197 (+)

Expression


Co-expression Network