G28676 (ptprf)


Basic Information

Item Value
gene id G28676
gene name ptprf
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16729214 ~ 16731205 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33821
CTTCCAAGACAGTGAGCTTGGCACTGGTGTTAATTTCCCCCATGCTGTTAGTGGCTGTGCACTCGTAGATTGCCTCATCTCGGTGCGTCCTCAGGGGCTGGATCCTTAACACTGACCCTGAGCCATCATCAAATTCAAtcacctgaaagcgctGTGAGCTGACTTTCTTGCCCTTCTTCATCCATGTGATACGTGGCTTGGGCTCGCCAACTGCCTGGCACACGAAAGATGCAACGCCTCCAGAAATGCCAGTCTGATCCTCTGGAGACTTAATGAAGCTGGGCAtgccttaaacacacacagagggagagagagagagagagagagag

Function

symbol description
ptprf Enables cell adhesion molecule binding activity and protein tyrosine phosphatase activity. Involved in several processes, including negative regulation of receptor binding activity; peptidyl-tyrosine dephosphorylation; and synaptic membrane adhesion. Located in extracellular exosome. Implicated in hyperinsulinism. Biomarker of obesity.

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase F isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33821 True 329 lncRNA 0.52 2 16729214 16731205

Neighbor

gene id symbol gene type direction distance location
lrrc41 lrrc41 coding upstream 254068 16464943 ~ 16475146 (+)
LOC113544464 LOC100335019,LOC108438034,LOC103026398,LOC100706528,LOC101066223 coding upstream 265678 16460401 ~ 16463536 (+)
tspo tspo,LOC107721166,LOC107568174,LOC107667354 coding upstream 335207 16391412 ~ 16394007 (+)
ppil1 ppil1,LOC107667353,LOC107673584 coding upstream 363277 16363671 ~ 16365937 (+)
si:ch211-157b11.14 LOC108271613 coding upstream 401062 16321000 ~ 16328152 (+)
hyi hyi coding downstream 322927 17054132 ~ 17066099 (+)
LOC117595909 NA coding downstream 448038 17179243 ~ 17184683 (+)
glulb LOC108272186,LOC107733907,LOC107757425,LOC107555380,LOC108437688,LOC107704001,LOC107660462 coding downstream 661124 17392329 ~ 17396139 (+)
znf648 NA coding downstream 702143 17433348 ~ 17437899 (+)
gadd45ab gadd45a,gadd45ab,LOC108272203,LOC107670797,LOC107555372,LOC107678351 coding downstream 734376 17465581 ~ 17468158 (+)
G28574 NA non-coding upstream 193869 16533875 ~ 16535345 (+)
LOC117599087 NA non-coding upstream 234902 16489078 ~ 16494312 (+)
G28446 NA non-coding upstream 288443 16436121 ~ 16440771 (+)
G28410 NA non-coding upstream 367867 16358082 ~ 16361347 (+)
G28405 NA non-coding upstream 383128 16345645 ~ 16346086 (+)
LOC113524191 NA non-coding downstream 111039 16842244 ~ 16843385 (+)
G28865 NA non-coding downstream 321725 17052930 ~ 17053746 (+)
G28889 NA non-coding downstream 369021 17100226 ~ 17137850 (+)
G28997 NA non-coding downstream 692616 17423821 ~ 17426323 (+)
G29036 NA non-coding downstream 799370 17530575 ~ 17535351 (+)
tomm6 tomm6 other upstream 328103 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 546905 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 625966 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 938770 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 1424720 15278822 ~ 15304494 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 2043565 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 2086197 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 2201478 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 2329892 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 2803140 19534345 ~ 19537197 (+)

Expression


Co-expression Network