G28997


Basic Information

Item Value
gene id G28997
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17423821 ~ 17426323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34197
TGTAAGTGGAAAACTTTTAAATAATCACAAGcatatttttataaacaatatgcatttattttcttccCAAGGTCTTACAAAGTGCAGCTGCTTTCAAGAAATTTTAATAATTCTtccttacaaaaataatacaaaaatgaaagtACAGTAAGCTCAAGATAGGCAGCATGCTACAAAATGCCTGAGAACTCCATTTTTAAGATTTCAAATTTTGGAGCCATCAGTAAAGGCAACAATAATAAACTGGCtcctaattttttaattaaccaCCAACacaatttaaattttacagttcttaaaaaaacaataaaacaataaacaccttctgaagAAACTCAAAGGTGTACTTCAGATCCGACGGATAGCTCAGATTCAAGCTGTATATGACGCCCAAAAGCAGAGCACAAGCCTTGGTGACATCCTCCAAGCTCCTGAAGCACTTTCACTCCTTCAACAATGATTCCACATCCGATGGTGCGTCACAGATTTCTGCATCTTCAGGTTTGATGATGTAAATTCCAGTGACTCTATTAGCCATGTCTCTGTCAGCATTCTCAAAGTCTGTCTGTATACTCCTTCATGAGGTTTTCATAGTCTTCATTAGGATACACAGAAAGTGCTCTGACAATGCAAGCTCTCAGAGTTGAAAtttgctacttctgagatgccagtgatcctgtccctttctgctcctcctcgctgcctgatccatcctgatgccccttctgctcctcctcgctgcctgatccatcctgatgccccttctgctcctcctcgctggctgacccatcctgatgtcCTACTTCGGTtcagttcgctcgctgctgctgggcgcggccccatatggacggtctgaagaaccatttggtttgctggggatagtcccacctgggggctgtggagatggcttggggatcacatattgggagctgtactgtaatggcttgggactgcgattgctgtagtggctttggggctgcggttgccacaaacaccttcgtactcaggactccatcagtggacagtggatagattttaaccaaccagacttcttgcaaaaactgtgatgaatttattggttgcacaattgcactatttgtccatatagtacacaataatagaagggatttatttataattgcactagccgttgcacccagatgaggtgggttcccttttgagtctggttcctctcaaggtttcttcctcatatcatctcatggagtttttccttgccaccgtcgcctctggcttgctcattagggataaattcacatatttacaatatattttttgtgaatccatttatttctgtaaagctgctttgtgacaatgtccactgttaaaagcgctatacaaataaaattgaattgaattgaaatggtATCATTCTGTAGAAGAAATTCTCTCATAAATATCTGAATCAGTGGGATGGTGGTGATTTGAGTGAACTCAGCAGCAATCTAGAGATTTAAGAGACATAACACAATACTAAGGAtagctttcattttttaaattacattgaATGTTATTCAATGACATCTGAAGACAAAACAGCATTTAGGCTACCTTCATACCTAGGCATGAATAACTAAACAAGCACATTGTGATATCAGGGAAGATAATTTGTTTCACCACTTCAAACTATTAACAACACAAATATAGTTATACCATCATATTTACCACATGTTCACAAAACAGAGCTGGCCATCTGCTTTCAAATTCAACATAAATGGCTTGTCTTCAATTACTTGATGTCTTCTGTAGGTAAAAgtccttttttttgtcctttttctgAACCTCAGACAGCAGTGCCAATCGCTCTTCCTCTAGGCTGTCTTTGTTTTCTCCAGCTGGATAATCAGATGAAAATTGACTTCTTAGGCTTTTTGACTTGGTTTCAATGTGTACTTTCactatgtttgtgttttaaagaaTTTATCTTATTTTGGAACATCCAGCTGCCGGCAGGGTACGGCAATAGTTCCCCATCTTCCACTGTagactgattttattttactgattttac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34197 True 2029 lncRNA 0.40 2 17423821 17426323

Neighbor

gene id symbol gene type direction distance location
glulb LOC108272186,LOC107733907,LOC107757425,LOC107555380,LOC108437688,LOC107704001,LOC107660462 coding upstream 27682 17392329 ~ 17396139 (+)
LOC117595909 NA coding upstream 239138 17179243 ~ 17184683 (+)
hyi hyi coding upstream 357722 17054132 ~ 17066099 (+)
lrrc41 lrrc41 coding upstream 948675 16464943 ~ 16475146 (+)
LOC113544464 LOC100335019,LOC108438034,LOC103026398,LOC100706528,LOC101066223 coding upstream 960285 16460401 ~ 16463536 (+)
znf648 NA coding downstream 7025 17433348 ~ 17437899 (+)
gadd45ab gadd45a,gadd45ab,LOC108272203,LOC107670797,LOC107555372,LOC107678351 coding downstream 39258 17465581 ~ 17468158 (+)
tgfbr3 tgfbr3 coding downstream 240261 17666584 ~ 17767280 (+)
znf644b LOC108271612 coding downstream 378222 17804545 ~ 17840982 (+)
barhl2 barhl2,LOC107749991 coding downstream 492077 17918400 ~ 17922819 (+)
G28889 NA non-coding upstream 285971 17100226 ~ 17137850 (+)
G28865 NA non-coding upstream 370075 17052930 ~ 17053746 (+)
LOC113524191 NA non-coding upstream 580436 16842244 ~ 16843385 (+)
G28676 ptprf non-coding upstream 692616 16729214 ~ 16731205 (+)
G28574 NA non-coding upstream 888476 16533875 ~ 16535345 (+)
G29036 NA non-coding downstream 104252 17530575 ~ 17535351 (+)
G29105 NA non-coding downstream 257498 17683821 ~ 17688735 (+)
G29106 NA non-coding downstream 268431 17694754 ~ 17764773 (+)
G29281 znf326 non-coding downstream 657396 18083719 ~ 18085644 (+)
LOC113536874 NA non-coding downstream 931879 18358202 ~ 18360035 (+)
tomm6 tomm6 other upstream 1022710 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 1241512 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 1320573 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 1633377 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 2119327 15278822 ~ 15304494 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 1348447 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 1391079 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 1506360 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 1634774 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 2108022 19534345 ~ 19537197 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location