G29036


Basic Information

Item Value
gene id G29036
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17530575 ~ 17535351 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34246
GTTGACTTTTATTGCTTAGAGAATACAGCTTACAGCTCCTGCGAAGCCATGTGAACACGTGCCTCAACTAAAACTTACCAATCTTTACGAGATAAGAATTGACCACACATTCACAATGCAACTTCTACACACTGCAccagagagatacagaggaaCGAAAACCTTCTGCTCagatatgaaaacatttacagtttgatAGTTGCTATCAATATAGGGACACTGACGGTGGCATAGTTCAGTGCCATCAGTGACCAGAGTTTCCTTCTGTAAAGAGTGTAAAACTGTCCAGAGGTTTCTTAAGACTATCTGGTGACTGAAGTTTCATCTCTATCTTTGGTACTAAAGAGACAGATATCATTCTGTATTTCTCCTTTCAATACTGTTCTGAACACAGGCCAGACAAAAGCTGCATCCTACGTACACTGTACTCTTACTGACTTAAActaaaatggggaaaaaaaaaaaaaaaaatcctactttACAACCCAGATCAGCTCTCTGCCTAACACACAGAGCAAGACAGGGAAGGAACGATTGCTGTAAAAATCAATTCTCCGGAAAAAAGAAAGCTCTTAACTCaactattttacaaaaacaaagagCAAGAAATCTACAGGACACCTAAAATAGGAGGCATTTGAGTTTAAACACTCATTCCTGCACCAAACCGAGAACAACTAAACGTAACGCATCTTCTGCCCCCAATATATCATACGACTCAAAGTCCAAAAAACGATAATTCACATACAGTATGGTGccttaaaatatttaactgtcTGAAACAAAAGCAGGAATTCATGAAGAAGAAATATGtctttgaaaaataaaagtagggaaaaaaaagtctaacGCTATTCTGACATAAGGGGAGGGCCAAATAAAACAGCCGTCTTGGCCATGGTAATTTCTAAAAAGTCAATATAAACGGATACTGCGattgagacagaaagacaaagagagagagatagcgagagagagagagagagagagagagagagagagcacatgtCATCCTCTTCGTCGTCTTCCTGGGAGGATCGAgcgtgttgagctgcagtggcTGAAGCTGCTGCTGCTAACTGAGCCTGCTGTGCCGCCTGTTGCATCTGCAGCCACTCCTGCTGGGCGAGTTCAGCCTGCTGCTGCCGcgcctgCTTGGCGAATAACTCCTGCTGCTGGCGGAGAAGCTCCTCTTCTGGGATGCCGAGATTTTCCAGACGTGAGCTGGCCTTTCTCCGCTTCAGCGCGACTGTCTTACATTCCTGCAAAACGTCCTTCACTTCCGCTATGTAGGATCCAAAACCAAGACTTTCAAGTGCTtcaagagaaaaggaaaaaagaagggaTCTATTGGTCATTGGTGCCTATGATTCAAAGTGGCCTGTATCATCACACAGACCGAGACCACAGTATGAGTGAGCTTTTCAAACCACTAACTATGCACTATTACTTAGTACTTCAGGACATTACTAGAAGAATGCTCATACAGAAATGTAACTGTCTGTTAAattacaaagcaaaaacaacaaGGGATGTGCCCaaaaatttttttcaacatttgcATAGAATGGTGCCTTCTGAGTTACCCTTATCTGGCCGATTTTTGAAAGAGACATACTT
>TU34247
GTTGACTTTTATTGCTTAGAGAATACAGCTTACAGCTCCTGCGAAGCCATGTGAACACGTGCCTCAACTAAAACTTACCAATCTTTACGAGATAAGAATTGACCACACATTCACAATGCAACTTCTACACACTGCAccagagagatacagaggaaCGAAAACCTTCTGCTCagatatgaaaacatttacagtttgatAGTTGCTATCAATATAGGGACACTGACGGTGGCATAGTTCAGTGCCATCAGTGACCAGAGTTTCCTTCTGTAAAGAGTGTAAAACTGTCCAGAGGTTTCTTAAGACTATCTGGTGACTGAAGTTTCATCTCTATCTTTGGTACTAAAGAGACAGATATCATTCTGTATTTCTCCTTTCAATACTGTTCTGAACACAGGCCAGACAAAAGCTGCATCCTACGTACACTGTACTCTTACTGACTTAAActaaaatggggaaaaaaaaaaaaaaaaatcctactttACAACCCAGATCAGCTCTCTGCCTAACACACAGAGCAAGACAGGGAAGGAACGATTGCTGTAAAAATCAATTCTCCGGAAAAAAGAAAGCTCTTAACTCaactattttacaaaaacaaagagCAAGAAATCTACAGGACACCTAAAATAGGAGGCATTTGAGTTTAAACACTCATTCCTGCACCAAACCGAGAACAACTAAACGTAACGCATCTTCTGCCCCCAATATATCATACGACTCAAAGTCCAAAAAACGATAATTCACATACAGTATGGTGccttaaaatatttaactgtcTGAAACAAAAGCAGGAATTCATGAAGAAGAAATATGtctttgaaaaataaaagtagggaaaaaaaagtctaacGCTATTCTGACATAAGGGGAGGGCCAAATAAAACAGCCGTCTTGGCCATGGTAATTTCTAAAAAGTCAATATAAACGGATACTGCGattgagacagaaagacaaagagagagagatagcgagagagagagagagagagagagagagagagagcacatgtCATCCTCTTCGTCGTCTTCCTGGGAGGATCGAgcgtgttgagctgcagtggcTGAAGCTGCTGCTGCTAACTGAGCCTGCTGTGCCGCCTGTTGCATCTGCAGCCACTCCTGCTGGGCGAGTTCAGCCTGCTGCTGCCGcgcctgcaacacacacacacacacacacacacacacacacaatgcgtATGTAAGGGACATGCAGCACACTGCTCTATACACGCCAGGCACAGGACGCTATCAGAAATTCACCACAGAGTATAACTGCCATATAAACCAACATTGTACACTTAGGATGCCATGGTCCCCTCACTGCATGAGCTTTCCTGAGAAAATTTCTCTTCTTGCAGCAGGCTTGTAGCAGGATCAATACTTGCTCCAACACTTTTTTCTCTGTATATGCTCCCTTTGGGCCCCATCTTTAGGAAACGTGGtgtctcatttcactgttacgctgatgatacCCAGATTTATTTGCCACTTAAACGCACTGATAGCAACACTTTTGATACTTTGTTGGCTTGTATGAAGGATATTAAAATCTGGATGTCATCAGATTTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34246 True 1620 lncRNA 0.41 2 17530575 17535351
TU34247 False 1570 lncRNA 0.44 2 17530575 17532176

Neighbor

gene id symbol gene type direction distance location
gadd45ab gadd45a,gadd45ab,LOC108272203,LOC107670797,LOC107555372,LOC107678351 coding upstream 62417 17465581 ~ 17468158 (+)
znf648 NA coding upstream 92676 17433348 ~ 17437899 (+)
glulb LOC108272186,LOC107733907,LOC107757425,LOC107555380,LOC108437688,LOC107704001,LOC107660462 coding upstream 134436 17392329 ~ 17396139 (+)
LOC117595909 NA coding upstream 345892 17179243 ~ 17184683 (+)
hyi hyi coding upstream 464476 17054132 ~ 17066099 (+)
tgfbr3 tgfbr3 coding downstream 131233 17666584 ~ 17767280 (+)
znf644b LOC108271612 coding downstream 269194 17804545 ~ 17840982 (+)
barhl2 barhl2,LOC107749991 coding downstream 383049 17918400 ~ 17922819 (+)
LOC113532395 kyat3,ccbl2,LOC100332215 coding downstream 603704 18139055 ~ 18146917 (+)
LOC113536767 LOC108272161 coding downstream 763024 18298375 ~ 18413955 (+)
G28997 NA non-coding upstream 104252 17423821 ~ 17426323 (+)
G28889 NA non-coding upstream 392725 17100226 ~ 17137850 (+)
G28865 NA non-coding upstream 476829 17052930 ~ 17053746 (+)
LOC113524191 NA non-coding upstream 687190 16842244 ~ 16843385 (+)
G28676 ptprf non-coding upstream 799370 16729214 ~ 16731205 (+)
G29105 NA non-coding downstream 148470 17683821 ~ 17688735 (+)
G29106 NA non-coding downstream 159403 17694754 ~ 17764773 (+)
G29281 znf326 non-coding downstream 548368 18083719 ~ 18085644 (+)
LOC113536874 NA non-coding downstream 822851 18358202 ~ 18360035 (+)
LOC113530672 NA non-coding downstream 929533 18464884 ~ 18467320 (+)
tomm6 tomm6 other upstream 1129464 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 1348266 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 1427327 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 1740131 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 2226081 15278822 ~ 15304494 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 1239419 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 1282051 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 1397332 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 1525746 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 1998994 19534345 ~ 19537197 (+)

Expression


Co-expression Network