G29119


Basic Information

Item Value
gene id G29119
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17054088 ~ 17054656 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34351
GGGGGAGTGTTAATAAGAGCCACCTGCACCCCTGTTTCCTCTCGGACTGTGTGCAGCTCTCTCAGGTCAGAGCCGTACAGCCAAGCCGCCTCCACAGCCTGGAAACCTGCACGCGCAGCTGCTcgcactctctcactcacctcGGGCAGCTCCGTGAACAACCACGAGATGTTGGCGCAAAATTTAAGCGATGTCATGTTCTCTCATCTGCTTGGCTGTTTGCGCTCTCGACCCTTTATCTAACCTACCTAACAAAACCAACAACAGCTGATGACTAGTCCGGTACTATGACAGTCCAGCTCCTGTCCAATCGGCTTACCTCAAAGTGTGAACCA

Function

GO: NA

KEGG:

id description
ko05216 Thyroid cancer

RNA

RNA id representative length rna type GC content exon number start site end site
TU34351 True 335 lncRNA 0.54 2 17054088 17054656

Neighbor

gene id symbol gene type direction distance location
ptprfa ptprf,ptprfa,LOC107709086 coding downstream 221220 16625654 ~ 16832868 (-)
kdm4aa kdm4aa,kdm4a,LOC108412690 coding downstream 431491 16589347 ~ 16622597 (-)
st3gal3a st3gal3,LOC108412691 coding downstream 467842 16534768 ~ 16586246 (-)
LOC113523777 artn coding downstream 534930 16491681 ~ 16519158 (-)
rad54l rad54l coding downstream 565159 16476425 ~ 16488929 (-)
szt2 szt2 coding upstream 11699 17066355 ~ 17169352 (-)
med8 med8,LOC107690829,LOC107554872,LOC107708572 coding upstream 131989 17186645 ~ 17191459 (-)
LOC113536221 NA coding upstream 143333 17197989 ~ 17203249 (-)
pbx1b pbx1,pbx1b,LOC108272157,LOC103479586 coding upstream 165928 17220584 ~ 17294005 (-)
sec16b sec16b coding upstream 383984 17438640 ~ 17462625 (-)
G28779 NA non-coding downstream 482564 16570790 ~ 16571524 (-)
G28537 NA non-coding downstream 564173 16462102 ~ 16489915 (-)
G28508 NA non-coding downstream 694567 16358139 ~ 16359521 (-)
G28515 NA non-coding downstream 724667 16329108 ~ 16329421 (-)
G28385 NA non-coding downstream 787333 16266556 ~ 16266755 (-)
G29167 LOC108272186 non-coding upstream 338802 17393458 ~ 17394467 (-)
G29166 LOC108437688,LOC108272186,LOC103143039,LOC105011759,LOC105916686 non-coding upstream 340110 17394766 ~ 17396199 (-)
LOC113528975 NA non-coding upstream 369215 17423871 ~ 17429778 (-)
G29174 NA non-coding upstream 378797 17433453 ~ 17434168 (-)
G29176 NA non-coding upstream 399629 17454285 ~ 17468157 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 918373 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 1558879 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 1593087 15456635 ~ 15461001 (-)
G27843 NA other downstream 1755069 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 2178098 14872948 ~ 14875990 (-)
G29158 NA other upstream 218299 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 417674 17472330 ~ 17529315 (-)
G29263 NA other upstream 894501 17949157 ~ 17949718 (-)
G29279 NA other upstream 1016331 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 1093572 18148228 ~ 18195628 (-)

Expression


Co-expression Network