G29167 (LOC108272186)


Basic Information

Item Value
gene id G29167
gene name LOC108272186
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17393458 ~ 17394467 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34418
GCAAATCATAACCCCAGCGTACAGACAGGCTCTATAATGGGCCTCAACAATATCTCTGCCATAGGCCTTATCCGCTCCCACGCCACAGTAATAAGGACCTGTTTAAACACATAACATCCCTTCATTCAGACCAGAAGCACagtcattcatgcattcatccTAATGCAAGGGCAGAGAGCAGGACTGAATTAAAAATCATAGTGCAGTCTACAAAGATCTTCACCTTGTGGTCCTGGGAAACCATTTGAGGGCCAGCCAAAAGGATGACCATCTATGGCAAGGAGTGTGTACTCCTGCTCCATTCCAAACCATGGATGTTGGTCCACTACCTTGCTCATGATCTTATCACACATCTGACGAAGGTTGGTTTCTAAGAGAAGAGTCAATAAAGGTCAAAAAGGTTTCCTGTTGTATTTGAGAACCTCACAAAGAACCAGCTTGTTGGGGTCCTTCCTGAAGGGGTCTCTAAACATGGCCTTTGGTATGAGGTACATGTCACTGTTCGAGCCCTCAGCCTGGTACGTACTAGAGCCATCAAAATTCCACTCTGGGAGATCTGCAGAAACCCACAAACCATAAATACACAGTCAAATCAGATGAATCAGACTTTGACGTAGAGCATTTAGCAAACATTTACGTGACACTATGATCTGTGCATGCAAGGAGTGGCGTGAAGTGAAAGTGCCACCAAAATGAAGTTGGATGCAAACTAAACAGTACCTTCAATGCTCTTGGGTTCTGAGTCCAGAGTCCTGCTCTTGCAGCGGAGTCCCTCTCCAGTCCCATCAATCCAGATGTACATGACCTGCACTTTGTCTCCCTGTGGCAGGTCCATGTACAGCTGCTTCACAGCTTTATTCAGCTTTGCGCTGGAGGAAGTGGCCATTTTCTCTTTGGGCTATAAGACTCctagagagacacac

Function

NR:

description
PREDICTED: glutamine synthetase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34418 True 923 lncRNA 0.41 2 17393458 17394467

Neighbor

gene id symbol gene type direction distance location
pbx1b pbx1,pbx1b,LOC108272157,LOC103479586 coding downstream 99453 17220584 ~ 17294005 (-)
LOC113536221 NA coding downstream 190209 17197989 ~ 17203249 (-)
med8 med8,LOC107690829,LOC107554872,LOC107708572 coding downstream 201999 17186645 ~ 17191459 (-)
szt2 szt2 coding downstream 224106 17066355 ~ 17169352 (-)
ptprfa ptprf,ptprfa,LOC107709086 coding downstream 560590 16625654 ~ 16832868 (-)
sec16b sec16b coding upstream 44173 17438640 ~ 17462625 (-)
dr1 dr1,LOC107555385 coding upstream 136092 17530559 ~ 17539905 (-)
LOC113528309 NA coding upstream 149209 17543676 ~ 17547134 (-)
scinla LOC108272108,LOC108437692,LOC105895209,LOC107675434,LOC107730699,LOC107564434,LOC105011765 coding upstream 156469 17550936 ~ 17567323 (-)
si:ch73-389b16.1 LOC108271542,LOC108437695 coding upstream 182924 17577391 ~ 17579519 (-)
G29119 NA non-coding downstream 338802 17054088 ~ 17054656 (-)
G28779 NA non-coding downstream 821934 16570790 ~ 16571524 (-)
G28537 NA non-coding downstream 903543 16462102 ~ 16489915 (-)
G28508 NA non-coding downstream 1033937 16358139 ~ 16359521 (-)
G28515 NA non-coding downstream 1064037 16329108 ~ 16329421 (-)
G29166 LOC108437688,LOC108272186,LOC103143039,LOC105011759,LOC105916686 non-coding upstream 299 17394766 ~ 17396199 (-)
LOC113528975 NA non-coding upstream 29404 17423871 ~ 17429778 (-)
G29174 NA non-coding upstream 38986 17433453 ~ 17434168 (-)
G29176 NA non-coding upstream 59818 17454285 ~ 17468157 (-)
G29196 NA non-coding upstream 92894 17487361 ~ 17511455 (-)
G29158 NA other downstream 113285 17272955 ~ 17280173 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 1257743 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 1898249 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 1932457 15456635 ~ 15461001 (-)
G27843 NA other downstream 2094439 15297309 ~ 15299019 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 77863 17472330 ~ 17529315 (-)
G29263 NA other upstream 554690 17949157 ~ 17949718 (-)
G29279 NA other upstream 676520 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 753761 18148228 ~ 18195628 (-)
LOC113537624 NA other upstream 1399558 18794025 ~ 18816812 (-)

Expression


Co-expression Network