LOC113528975


Basic Information

Item Value
gene id LOC113528975
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17423871 ~ 17429778 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34423
CGCCTATAGAAAAAGCCTACAGTATCAAATCTGATACAAATTTAGTAGCATTGTTCTTGAGTAAAATATAGAGCTatggaagaaaaacaataaacagtgaGTAGGCCTTACAGAGTAGATATTCATAGACAAAAAAGTTTCTCAAAAAAGAGAACACATTTTCCATGAACTGAACGTCTAGAACACGTGAGCGGCCATGTTTAAATGCCTGGTGAACACGTGTGCAGCAGTGTTATTGTACTAAACGGCCACTAGATGGCGCATCATGGTTATTAATGCACATACAGTAGGGCTCTTCTTAAAGACAAGGAATTGTGTGCTACTGAAACATGAGCTTAAAGTTGATTCACACAGCGGATAGGGTAATCTGTAACGGCTGGGGGTAAAAGGCTGTGTAGGCCAAAGCTGAGGAACGGAAGACAGACAGAACCATGTTGAGGAGAAGATGCAGGTGACTCTGTAAgccagaggcgacggtggcaaggaaaaactccatgagatgatatgaggaagaaaccttgagaggaaccagactcaaaagggaacccacctcatctgggtgcaacggctagtgcaattataaataaatcccttctattattgtgtactatatggacaaatagtgcaattgtgcaaccaataaattcatcacagtttttgcaagaagtctggttggttaaaatctatccactgtccactgatggagtcctgagtacgaaggtgtttgtggcaaccgcagccccaaagccactacagcaatcgcagtcccaagccattacagtacagctcccaatatgtgatccccaagccatctccacagcccccaggtgggactatccccagcaaaccaaatggttcttcagaccgtccatatggggccgcgcccagcagcagcgagcgaactgaACCGAAGTAGgacatcaggatgggtcagccagcgaggaggagcagaaggggcatcaggatggatcaggcagcgaggaggagcagaaagggacaggatcactggcatctcagaagtagcaaaTTTCAACTCTGAGAGCTTGCATTGTCAGAGCACTTTCTGTGTATCCTAATGAAGACTATGAAAACCTCATGAAGGAGTATACAACTTTGAGAATGCTGACAGAGACATGGCTAATAGAGTCACTGGAATTTACATCATCAAACCTGAAGATGCAGAAATCTGTGACGCACCATCGGATGTGGAATCATTGTTGAAGGAGTGAAAGTGCTTCAGGAGCTTGGAGGATGTCACCAAGGCTTGTGCTCTGCTTTTGGGCGTCATATACAGCTTGAATCTGAGCTATCCGTCGGATCTGAAGTACACCTTTGAGTTTcttcagaaggtgtttattgttttattgtttttttaagaactgtaaaatttaaattgtGTTGGtggttaattaaaaaattaggaGCCAGTTTATTATTGTTGCCTTTACTGATGGCTCCAAAATTTGAAATCTTAAAAATGGAGTTCTCAGGCATTTTGTAGCATGCTGCCTATCTTGAGCTTACTGTactttcatttttgtattatttttgtaaggaAGAATTATTAAAATTTCTTGAAAGCAGCTGCACTTTGTAAGACCTTGggaagaaaataaatgca
>XR_003403011.2
CTCTTCTTAAAGACAAGGAATTGTGTGCTACTGAAACATGAGCTTAAAGTTGATTCACACAGCGGATAGGGTAATCTGTAACGGCTGGGGGTAAAAGGCTGTGTAGGCCAAAGCTGAGGAACGGAAGACAGACAGAACCATGTTGAGGAGAAGATGCAGGTGACTCTGTAAgCTGGAGAAAACAAAGACAGCCTAGAGGAAGAGCGATTGGCACTGCTGTCTGAGGTTcagaaaaaggacaaaaaaaaggacTTTTACCTACAGAAGACATCAAGTAATTGAAGACAAGCCATTTATGTTGAATTTGAAAGCAGATGGCCAGCTCTGTTTTGTGAACATGTGATTGCTGCTGAGTTCACTCAAATCACCACCATCCCACTGATTCAGATATTTATGAGAGAATTTCTTCTACAGAATGATaccatttcaattcaattcaattttatttgtatagcgcttttaacagtggacattgtcacaaagcagctttacagaa
>XR_003403015.2
TTAAAGACAAGGAATTGTGTGCTACTGAAACATGAGCTTAAAGTTGATTCACACAGCGGATAGGGTAATCTGTAACGGCTGGGGGTAAAAGGGTGAGTTGGAAGTGTCATATATTAAATCAGagtgtttttcattcattataaACCAATAACCATTATATGAAAACACcgttagggtttttttttgtttgtttaacgaTAGCTTCCACTTGACTTCATCGACTGTCCCACCAGTGCTacctatatatctatatctcacAGACCAGACTTCTAGCTTTTACTGAATTTATCACTCAACGTGTCCAAGAACCGCCTACATTCACGGGAAGAGGCTATTTGATTGGCATTAAAAATGACCAACCACAGAACCCCTGagCTGTGTAGGCCAAAGCTGAGGAACGGAAGACAGACAGAACCATGTTGAGGAGAAGATGCAGGTGACTCTGTAAgCTGGAGAAAACAAAGACAGCCTAGAGGAAGAGCGATTGGCACTGCTGTCTGAGGTTcagaaaaaggacaaaaaaaaggacTTTTACCTACAGAAGACATCAAGTAATTGAAGACAAGCCATTTATGTTGAATTTGAAAGCAGATGGCCAGCTCTGTTTTGTGAACATGTGATTGCTGCTGAGTTCACTCAAATCACCACCATCCCACTGATTCAGATATTTATGAGAGAATTTCTTCTACAGAATGATaccatttcaattcaattcaattttatttgtatagcgcttttaacagtggacattgtcacaaagcagctttacagaa
>XR_004577385.1
GAATTGTGTGCTACTGAAACATGAGCTTAAAGTTGATTCACACAGCGGATAGGGTAATCTGTAACGGCTGGGGGTAAAAGGCTTCCACTTGACTTCATCGACTGTCCCACCAGTGCTacctatatatctatatctcacAGACCAGACTTCTAGCTTTTACTGAATTTATCACTCAACGTGTCCAAGAACCGCCTACATTCACGGGAAGAGGCTATTTGATTGGCATTAAAAATGACCAACCACAGAACCCCTGagCTGTGTAGGCCAAAGCTGAGGAACGGAAGACAGACAGAACCATGTTGAGGAGAAGATGCAGGTGACTCTGTAAgCTGGAGAAAACAAAGACAGCCTAGAGGAAGAGCGATTGGCACTGCTGTCTGAGGTTcagaaaaaggacaaaaaaaaggacTTTTACCTACAGAAGACATCAAGTAATTGAAGACAAGCCATTTATGTTGAATTTGAAAGCAGATGGCCAGCTCTGTTTTGTGAACATGTGATTGCTGCTGAGTTCACTCAAATCACCACCATCCCACTGATTCAGATATTTATGAGAGAATTTCTTCTACAGAATGATaccatttcaattcaattcaattttatttgtatagcgcttttaacagtggacattgtcacaaagcagctttacagaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34423 True 1621 lncRNA 0.43 5 17423871 17429778
XR_003403011.2 False 496 lncRNA 0.41 4 17425604 17429486
XR_003403015.2 False 773 lncRNA 0.39 4 17425604 17429480
XR_004577385.1 False 653 lncRNA 0.42 5 17425604 17429469

Neighbor

gene id symbol gene type direction distance location
pbx1b pbx1,pbx1b,LOC108272157,LOC103479586 coding downstream 129866 17220584 ~ 17294005 (-)
LOC113536221 NA coding downstream 220622 17197989 ~ 17203249 (-)
med8 med8,LOC107690829,LOC107554872,LOC107708572 coding downstream 232412 17186645 ~ 17191459 (-)
szt2 szt2 coding downstream 254519 17066355 ~ 17169352 (-)
ptprfa ptprf,ptprfa,LOC107709086 coding downstream 591003 16625654 ~ 16832868 (-)
sec16b sec16b coding upstream 8862 17438640 ~ 17462625 (-)
dr1 dr1,LOC107555385 coding upstream 100781 17530559 ~ 17539905 (-)
LOC113528309 NA coding upstream 113898 17543676 ~ 17547134 (-)
scinla LOC108272108,LOC108437692,LOC105895209,LOC107675434,LOC107730699,LOC107564434,LOC105011765 coding upstream 121158 17550936 ~ 17567323 (-)
si:ch73-389b16.1 LOC108271542,LOC108437695 coding upstream 147613 17577391 ~ 17579519 (-)
G29166 LOC108437688,LOC108272186,LOC103143039,LOC105011759,LOC105916686 non-coding downstream 27672 17394766 ~ 17396199 (-)
G29167 LOC108272186 non-coding downstream 29404 17393458 ~ 17394467 (-)
G29119 NA non-coding downstream 369215 17054088 ~ 17054656 (-)
G28779 NA non-coding downstream 852347 16570790 ~ 16571524 (-)
G28537 NA non-coding downstream 933956 16462102 ~ 16489915 (-)
G29174 NA non-coding upstream 3675 17433453 ~ 17434168 (-)
G29176 NA non-coding upstream 24507 17454285 ~ 17468157 (-)
G29196 NA non-coding upstream 57583 17487361 ~ 17511455 (-)
G29213 NA non-coding upstream 207549 17637327 ~ 17638017 (-)
G29223 NA non-coding upstream 270983 17700761 ~ 17714365 (-)
G29158 NA other downstream 143698 17272955 ~ 17280173 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 1288156 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 1928662 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 1962870 15456635 ~ 15461001 (-)
G27843 NA other downstream 2124852 15297309 ~ 15299019 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 42552 17472330 ~ 17529315 (-)
G29263 NA other upstream 519379 17949157 ~ 17949718 (-)
G29279 NA other upstream 641209 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 718450 18148228 ~ 18195628 (-)
LOC113537624 NA other upstream 1364247 18794025 ~ 18816812 (-)

Expression


Co-expression Network