G29279


Basic Information

Item Value
gene id G29279
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18070987 ~ 18072909 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34546
CCTGCATATGTTTGTCTACCTTTTACCTTCTATGTTTGGTTATGGCCTTTGGATTATCCCTGTACTTAGTTTGCTGAGTCTTCTGCATTTTGTCCTATGTCTACTTTCTGGATACAATTTTAGGATAACATTTATCAGTTTGTTTAGCttgtattttgttaataaaCCCCAGTACATAGTTCACCTCACAAACCTGGCAGTGACCAGTTTTAAACCCACAGTTGCAATTTCTAAGAAGTATTACAGATCCCCTGGTAAATGTATGCCAAGCTGTCAGATGAGGGAAACAATGCTGTTTAACAGAGCAGTTATGTCTGTATTGTGGAGAAAGAGGACATTTCAGAGCTTGTCGTCAACTTCTGTAACACCTGGTATCAAGAATGTGGATTATAGCGGAGTTGCAAAGTCtggaatttgtttttatttagcacCGTTGTCTCAGTTTTGTGAACAGCACCaacctgg

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU34546 True 465 TUCP 0.39 2 18070987 18072909

Neighbor

gene id symbol gene type direction distance location
LOC117599332 NA coding downstream 275636 17794638 ~ 17795351 (-)
brdt brdt,LOC107564438,LOC106584160 coding downstream 414777 17637150 ~ 17656210 (-)
ephx4 ephx4,LOC107749983,LOC107555389,LOC107564433,LOC107678348,LOC107730701,LOC107675432 coding downstream 438843 17618116 ~ 17632144 (-)
btbd8 LOC108271611 coding downstream 456398 17583651 ~ 17614589 (-)
si:ch73-389b16.1 LOC108271542,LOC108437695 coding downstream 491468 17577391 ~ 17579519 (-)
znf326 znf326 coding upstream 10812 18083721 ~ 18090316 (-)
lrrc8db lrrc8db,LOC108272026,LOC108413222,LOC107730703,LOC107749977,LOC107564626,LOC107675437 coding upstream 21258 18094167 ~ 18106279 (-)
lrrc8c lrrc8c,LOC108272152,LOC108413226,LOC103030093,LOC107749978,LOC107593158,LOC107698887 coding upstream 43496 18116405 ~ 18126912 (-)
lmo4b lmo4,lmo4b,LOC103026253,LOC107593176 coding upstream 376348 18449257 ~ 18464571 (-)
hs2st1b hs2st1b,LOC108271533,LOC108427652,LOC107694133,LOC107679861,LOC107557741,LOC106560611 coding upstream 428629 18501538 ~ 18586226 (-)
G29237 NA non-coding downstream 228167 17784475 ~ 17842820 (-)
G29223 NA non-coding downstream 356622 17700761 ~ 17714365 (-)
G29213 NA non-coding downstream 432970 17637327 ~ 17638017 (-)
G29196 NA non-coding downstream 559532 17487361 ~ 17511455 (-)
G29176 NA non-coding downstream 602830 17454285 ~ 17468157 (-)
G29439 NA non-coding upstream 379559 18452468 ~ 18452976 (-)
G29541 NA non-coding upstream 541448 18614357 ~ 18614724 (-)
G29542 NA non-coding upstream 541960 18614869 ~ 18615874 (-)
G29551 NA non-coding upstream 561169 18634078 ~ 18634357 (-)
G29612 NA non-coding upstream 811075 18883984 ~ 18887011 (-)
G29263 NA other downstream 121269 17949157 ~ 17949718 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other downstream 541672 17472330 ~ 17529315 (-)
G29158 NA other downstream 790814 17272955 ~ 17280173 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 1935272 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 2575778 15461950 ~ 15495209 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 75319 18148228 ~ 18195628 (-)
LOC113537624 NA other upstream 721116 18794025 ~ 18816812 (-)
trnag-ucc NA other upstream 743350 18816259 ~ 18816330 (-)
trnap-ugg NA other upstream 744218 18817127 ~ 18817198 (-)
glmnb LOC108272089 other upstream 1930450 20003359 ~ 20014094 (-)

Expression


Co-expression Network