G29281 (znf326)


Basic Information

Item Value
gene id G29281
gene name znf326
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18083719 ~ 18085644 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34548
GTTTCaagccttttatttttttcatctatattttatatataacttaTATACAGGCAATTCAACAAATCTGGCTTGTACAGTTTTATACTAAATTTCTGTTTTGCAAAGATACACATAAAAGAgtaatgagtgaatgaatgagtcaggatgatgaggaggaaaaaaacttTCAGTACAGTGGACATACAACAGATCATTGATTAACATGAGGGACACAAAGCATTTGAAAGCCATATTCAAAGGTTTCTCAGAAATGGCACAGCACTTGCAAGTGGGTGACCAATACAGGGTAGAGGGACTGGAAACTagcaaaggaagaaagaagagagataCAAAGTATGACATGAGAAATTACATGGCATGCATGCATTGCcccacacacaatctcacacacacatacataattcTCCAAGTATACAATACTTAACACAGTAACCATCTCTATCCCAATATTGTATGTATCAACACCTGTAATTCTGCCATTAAAGCAGAACTGAAAATCATTAACATCTCCAACTGCACAATTTGCTACAAACTCAACTTGTAAAGGAAGAACACTATCTGATGCCTTTAGAGTTCCTAATGTTGGATGACATCACATGGATTGAATGAACACGTGTATATCAAGCATCAGAGGACGgtcatttttaaacatcattttccattttatcGTCCTCAGGTTCAGACAAATCTGAGCTAGTGTCTTCTTTAGCATCCATTACAAAAGGGTCTTCTCCCTGAAAATTACAAATCGTCACCACCTTATGTACAACATGGCGAATATTTATGAGCTCATGAGCAGTATTTACAGTTACCTTGATGTATTTCTCATAGCGAATTTTAACactgtcattatttattatggCTTTTGCCGTCAGCACACTCTCCCGTTTCAGCTGCTCTTTGTACACCTTTAGAGGACACAAAAAagccatatttttatttaaaatgagtaaaaatggaTGGAACAATTGccatgaaatatttaaagcacAGTCCATAGCTGATGTACCACTTTGGATTTTAGGTGTTGAGGGGAACGGCGATGCTGCTGGACAGAAGTAATAACAGCAGGAATGTAAATGTTGCAGGCCATACAGTGCACCACCTCCACCTTCCTCATGTAGTCATCCTCAGTCACCCCTGTACAGCCTTCCATGACTTTCTGGTTTGCTTTCTGGTCTGAAAGACTGTGTAACTTGCACAAAGCAGACACTGTCTTACGAAACTTGTGCACCATACAGTCCTTTtacaaaaaagaacagaaaatcaCATGATTGcatacaaatgattttttttttaataatcttctATAGCAGACTTACGTGGAGAAAGCTAATGACTCGGTCATCAAACTTGGCCTGTCGTCGAATGTAGTCAAGTGTTTCATGGTGATATGTGCTTCCAAAATGCTTTTCAATGTCTTTGTCTTCAAATGTGCGAAATTTACAAAAGGCACATGTAAAAGCTAATCTAAAGAGAAACAAACCATTATTACATTGTGAAAAGTGAAGTGAGATTGATGTGGTGTTAAGG

Function

symbol description
znf326 Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in regulation of DNA-templated transcription, elongation and regulation of RNA splicing. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be part of DBIRD complex. Predicted to be active in nucleus. Orthologous to human ZNF326 (zinc finger protein 326).

NR:

description
PREDICTED: DBIRD complex subunit ZNF326 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34548 True 1536 lncRNA 0.37 2 18083719 18085644

Neighbor

gene id symbol gene type direction distance location
barhl2 barhl2,LOC107749991 coding upstream 160900 17918400 ~ 17922819 (+)
znf644b LOC108271612 coding upstream 242737 17804545 ~ 17840982 (+)
tgfbr3 tgfbr3 coding upstream 316439 17666584 ~ 17767280 (+)
gadd45ab gadd45a,gadd45ab,LOC108272203,LOC107670797,LOC107555372,LOC107678351 coding upstream 615561 17465581 ~ 17468158 (+)
znf648 NA coding upstream 645820 17433348 ~ 17437899 (+)
LOC113532395 kyat3,ccbl2,LOC100332215 coding downstream 53411 18139055 ~ 18146917 (+)
LOC113536767 LOC108272161 coding downstream 212731 18298375 ~ 18413955 (+)
dzip1l LOC108271535 coding downstream 515315 18600959 ~ 18614825 (+)
LOC113527312 NA coding downstream 755793 18841437 ~ 18857162 (+)
farp2 farp2 coding downstream 772795 18858439 ~ 18917006 (+)
G29106 NA non-coding upstream 318946 17694754 ~ 17764773 (+)
G29105 NA non-coding upstream 394984 17683821 ~ 17688735 (+)
G29036 NA non-coding upstream 548368 17530575 ~ 17535351 (+)
G28997 NA non-coding upstream 657396 17423821 ~ 17426323 (+)
G28889 NA non-coding upstream 945869 17100226 ~ 17137850 (+)
LOC113536874 NA non-coding downstream 272558 18358202 ~ 18360035 (+)
LOC113530672 NA non-coding downstream 379240 18464884 ~ 18467320 (+)
G29561 sox14,LOC103365676,LOC100695210 non-coding downstream 603009 18688653 ~ 18691007 (+)
G29640 NA non-coding downstream 964582 19050226 ~ 19050438 (+)
G29641 NA non-coding downstream 965180 19050824 ~ 19051043 (+)
tomm6 tomm6 other upstream 1682608 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 1901410 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 1980471 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 2293275 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 2779225 15278822 ~ 15304494 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 689126 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 731758 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 847039 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 975453 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 1448701 19534345 ~ 19537197 (+)

Expression


Co-expression Network