zgc:153916 (LOC108271870,LOC108413223,LOC107749976)


Basic Information

Item Value
gene id zgc:153916
gene name LOC108271870,LOC108413223,LOC107749976
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18148228 ~ 18195628 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34596
aattttatgGTTATCATTAAGGAGAGGGCAGCTCAAATCACAGAGCAATCATAAACCTGACAAATggaatgtaaaaatgtatattcatCAAAAAGAACACAAACGTGTATATTTTTGGCACATGGATATGCCAAAGCAGCCTGTATTTTTAAtagtctgtttttaaaatgatgatcATAGAGTGACTCTTCCAGATCTTTCCTGACATTCGGTCACAGATGTTTTCACACAGTTTGTGGTTCTGTGTGCCAAGCAATAATCCTGTTTTGAAAATCAGGAAGTGGACATTTGGGCATTGCCCGGCATTCCTGGTGGATGAAACCCCTGGCTACAAGTGTTTAATCCATGGACTGCTAACACGCAGCAGACTCGTCCCCTCTGTCAGAAGGAGCTCTTATGGAACTCTCGTCAATGATTTCACTCTGTGTATCACCAAACCTTTTACAAATACACTCTGTACCCACAGTGGCGTCTGgtctctgtctcctcctccTGGTAAGGGCTGTAGAGGAATGCATGCCC
>XM_026917991.2
tttttttctttcgacTTCTTCAGAATACATTTTCGTTATACTGGAAGAATTTTGGCGCACGAAGTTTAATAAGCGGCCGACATGGAAACTGGGAAGCAGGGACAGAGCGGCGGAAAAGCTACACAAGCGAGGGCTTATTCAGTTCTCTAACGCGGAAAATAAGAGATCTCGGGGGCAGACGTGGTGGATTTTGACGACTTCTTGGGACGTTCTGCCTCCTGTTTGCTCTCCCGAGTTTTTGATTCAAAGTTGAGGGGGCAAAATGGCGGCCGATTCCGTGCAGagtgACGCTCGAGGTCACATGGTTTCGGATCGTCTGAGCCTGATGGGTCTCAGCATGGACCTGTCCGACACCACAGTGCAGCAGAAGCTGGACGAGATCAAGGACCAGATCAAGCGCGAGCTCCGCAAAGAGCTCAAGATCAAGGAAGGAGCGGAGAACCTGCGCAAAGCCACCACGGACAAGAAGAGCCTGGCTTATGTAGACACCATGCTGAAGAAGAGCAATAAGAAGGTGGAGGAGCTGCACCAGGAGCTGCAGGAACTCAACGCCCACATCGTGGTCAAAGACCCCGATGAACTCCGAGtttCAGAGTGCCCTTTGACTCCAGACACTCCATGCAGCACCAACAGCAGTCGTCTGGCTGCTCTTAAGAAACAGAACGACATCGAGCTCAAAGTGAAGCAGGGTGCTGAGAATATGATACAGATGTACTCCAACGGTTCCTACAAGGATCGTAAGCTGCTTGCCATGGCCCAGCAAATGCTCCAGGACAGCAAGACCAAAATTGAATTCATCCGGATGCAGATCCTCAAAGCGAGTCAGACCAATGAGATGAGTTATGAGAATAATGAAGTGCCTGCGAACAAGTCTATAATCAGTCCTCTGGACCTGCGGCTGGAGGAGTTGCGACATCACTGCCGGATCGAGTCTGCCGTGGCCGAGGGAGCCAAGAACGTCATGAAGCTGCTCGGCTCAGGGAAAGTTACAGAGAAAAAAGCTCATTCAGAGGCCCAGGCACGCTTTAACGAGTCGAGTCAGAAGCTGGACCTGCTGAGGTATTCTCTGGAGCAGAGGCTGAGCGAGCTGCCGCAGAGCCACCCAAAGGCCAGTCTGATCTCAGAAGAGCTCCTCATGATGGCCACTCCTCAGAGTCCACGCCAGAGCATCATCTCCTCCCACAACCAGTACAGCACTGTGGCTAAACCAGCAGCTCTCACAGGAACATTGGAGGTGAGGCTCATGGGCTGTCAGGATCTGCTGGAGAATGTTCCAGGCCGGTCTAAAGCAGCATCTGTGTCCCTGCCTGGCTGGAGCCCGAGTGAAACGCGCTCCTCCTTCATGAGCCGAACAAACAAGAACAAATCAGGCAGCAGCAGAAACCTCTCCAAAGCTGACGAGCTGTCCAATGAGATCAGTGCTGTTCTGAAACTGGACAACACAGTCGTGGGGCAGACGAACTGGAGACCAATCAGCAACCAGTCCTGGGACCAGAAATTCACACTGGAGCTCGATCGGTCTCGTGAGCTGGAGATCTCTGTGTACTGGAGAGACTGGCGCTCTCTGTGTGCTGTTAAGTTCCTAAGGCTGGAGGACTTCCTGGACAACCAGCGTCACGGCATGTGCCTCTACCTGGAGCCTCAAGGAACTCTGTTTGCTGAGGTTACATTTTTCAATCCAGTCATCGAGAGGCGACCAAAACTACAAAGGCAAAAGAAAatcttctcaaaacagcaagGTAAAACGTTCCTGCGTGCACCTCAGATGAACATCAACATTGCCACTTGGGGGCGTTTGATGAGAAGAGCAATCCCATCCGTCAACAATTCTTTCAGTCCTCAGGTGGCTGAGCTCGGATCAGCGCTGAGCCCTGAAACAGCAATCCTCGGCCATCCAGACTCGCCGTCTCTGTCCAGTGATCCGACCGTTACCAAATTAGACTTTGACAAAGGCGCCACTCCTCCTCCAAAACGCCATCCCACCCCTGCTGCTGAGctagaagaagaggaagaagaaccaCCATCACAAAACAAAATCCCTGATGGGAAGGAGGTTCAGGATGCATTAGCCACATTTGACTTCCTGAATGACAGCCGGAACAGTACGGTGTCCAAGCCGGAATATGATAGTCTGGTGGAAGATGAAATTCAGCAGCCTGATCTGGAGCTTACAGAGCAACACCATATTGATCCGAGaGAAGAGCCAGACATCCAGTTCAGTCTCAAAGACTTTTCTTGTGTGGCTGTTCTGGGCCGTGGACACTTTGGAAAGGTCTTACTGGCAGAATATAAGAGCACTGGGGAAATGTTTGCCATCAAAGCTCTGAAGAAAGGGGATATTGTTGCTCGTGATGAAGTTGACAGTCTGATGTGTGAGAAGAGGATCTTCGAGACGGTGAACAGTGTCCGGCACCCATTCCTGGTCAATCTCTTTGCTTGCTTCCAGACCAAGGAGcatgtttgttttgtaatgGAGTATGCAGCAGGAGGGGACCTGATGATGCACATCCATGCCGATGTCTTCTTAGAGCCACGTGCAGTTTTCTATGCTGCCTGTGTGGTCTTGGGCCTGCAGTTTCTACACGAGCATAAAATAGTATACAGGGACTTGAAGCTGGATAACCTGTTGCTGGATACCGAAGGATATGTAAAGATTGCTGACTTTGGGCTCTGCAAAGAAGGAATGGGCTTTAGAGATCGCACGAGTACATTCTGTGGCACTCCTGAGTTCCTGGCTCCTGAGGTCCTGACAGAAACATCATACACACGGGCTGTGGACTGGTGGGGTTTGGGTGTGCTCATCTTTGAGATGTTGGTTGGAGAGTCTCCATTTCCAGGTGATGACGAAGAGGAAGTGTTTGACAGCATTGTCAACGATGAAGTCCGTTACCCACGATTCCTCTCCACAGAGGCTATCTCCATAATGAGACGACTGTTGAGGAGAAATCCTGAGCGACGCCTTGGTGCAGGAGAGCGAGACGCTGAAGAAGTCAAGAAGCATCCGTTTTTTAGAAACATGGACTGGGCTGCTCTGTTGGCTAAGAAGATCCGGCCTCCGTTCATCCCCACCATTAAAGGACGGGAAGATGTTAGTAACTTTGATGACGAGTTCACTTCAGAGGCTCCAATCCTGACTCCACCACGTGAGCCCAGAATCCTGACCGCTTCAGAACAAGAGCTCTTCACGGACTTCGACTACATCGCTGACTGGTGTTAGCTCTTCCAGCTGACCATCAACAGCCCACACTCACTCAATACTGTGAACCAAACGGACAAACGAGGCTCACTGCCAGAGCCAGAGAACGTCTCTGTAAGGACCACTTCCCTCTCTCTGCTCTTAGCTGTGCCAGCTggcactgtttttttccccccctttaaaagaaaatgttttaccAGGACTTTCATTCACCTAGAAAAGTCATGGTAGCCCaacatggcatttttttttttttttgtcaagagcACTGGGATTTCTCATGAGTGGTCTCCACATTTACAAGTTCTCCTCTTTAATGAAGTCCTCTTTTGTTGGCTGTTCAGAGAAAACACTACAGAACTTCTGTTCCACAGTCTAACCAAGTGAAACACTACAAAGACTTGTTTTTTGAAGCTTATAGACAGTCCCCACTTTACAACACTTATCTTTTGATTCTCATATTTATTTAGTGTCTCCCTCCCCATGGTGCCTTAAACTCATCACAGATAGAGGGCTTCCAGAAAGGCAGCATCAGGTACTGAAAACCTCCCAACACACACTGCCAAACCAGCTCTTTATGCAATCTGAGGAGCCCTTGGCCAAGACCACCCACCAGACCAACTTCAATCTTGACTTAACATgaaagtcactttttttttcatctttggTGGTTTTCAGACTTAATTTCCACTTAAACATGTATTCATATCATAACTGAAAAAAGTGTAacttatagttttatataatatttttaggaAATTAGCATCTTGGATCTGCTGTATggtatgcatatgtgtgttctttttttttttttttttttttttttaaatatatgaattttatgGTTATCATTAAGGAGAGGGCAGCTCAAATCACAGAGCAATCATAAACCTGACAAATggaatgtaaaaatgtatattcatCAAAAAGAACACAAACGTGTATATTTTTGGCACATGGATATGCCAAAGCAGCCTGTATTTTTAAtagtctgtttttaaaatgatgatcATAGAGTGACTCTTCCAGATCTTTCCTGACATTCGGTCACAGATGTTTTCACACAGTTTGTGGTTCTGTGTGCCAAGCAATAATCCTGTTTTGAAAATCAGGAAGTGGACATTTGGGCATTGCCCGGCATTCCTGGTGGATGAAACCCCTGGCTACAAGTGTTTAATCCATGGACTGCTAACACGCAGCAGACTCGTCCCCTCTGTCAGAAGGAGCTCTTATGGAACTCTCGTCAATGATTTCACTCTGTGTATCACCAAACCTTTTACAAATACACTCTGTACCCACA

Function

NR:

description
PREDICTED: serine/threonine-protein kinase N2-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0007155 cell adhesion biological_process
GO:0007165 signal transduction biological_process
GO:0005856 cytoskeleton cellular_component
GO:0030496 midbody cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0005634 nucleus cellular_component
GO:0030027 lamellipodium cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K23691 PKN2; serine/threonine-protein kinase N2

RNA

RNA id representative length rna type GC content exon number start site end site
TU34596 False 522 lncRNA 0.62 1 18148228 18148749
XM_026917991.2 True 4496 mRNA 0.48 22 18148285 18195628

Neighbor

gene id symbol gene type direction distance location
lrrc8c lrrc8c,LOC108272152,LOC108413226,LOC103030093,LOC107749978,LOC107593158,LOC107698887 coding downstream 21316 18116405 ~ 18126912 (-)
lrrc8db lrrc8db,LOC108272026,LOC108413222,LOC107730703,LOC107749977,LOC107564626,LOC107675437 coding downstream 41949 18094167 ~ 18106279 (-)
znf326 znf326 coding downstream 57912 18083721 ~ 18090316 (-)
LOC117599332 NA coding downstream 352877 17794638 ~ 17795351 (-)
brdt brdt,LOC107564438,LOC106584160 coding downstream 492018 17637150 ~ 17656210 (-)
lmo4b lmo4,lmo4b,LOC103026253,LOC107593176 coding upstream 253629 18449257 ~ 18464571 (-)
hs2st1b hs2st1b,LOC108271533,LOC108427652,LOC107694133,LOC107679861,LOC107557741,LOC106560611 coding upstream 305910 18501538 ~ 18586226 (-)
trnae-cuc_6 NA coding upstream 381596 18577224 ~ 18577295 (-)
LOC113534471 LOC108271530,LOC108427638 coding upstream 420349 18615977 ~ 18623608 (-)
sox14 sox14,LOC103365676,LOC100695210 coding upstream 492970 18688598 ~ 18691082 (-)
G29237 NA non-coding downstream 305408 17784475 ~ 17842820 (-)
G29223 NA non-coding downstream 433863 17700761 ~ 17714365 (-)
G29213 NA non-coding downstream 510211 17637327 ~ 17638017 (-)
G29196 NA non-coding downstream 636773 17487361 ~ 17511455 (-)
G29176 NA non-coding downstream 680071 17454285 ~ 17468157 (-)
G29439 NA non-coding upstream 256840 18452468 ~ 18452976 (-)
G29541 NA non-coding upstream 418729 18614357 ~ 18614724 (-)
G29542 NA non-coding upstream 419241 18614869 ~ 18615874 (-)
G29551 NA non-coding upstream 438450 18634078 ~ 18634357 (-)
G29612 NA non-coding upstream 688356 18883984 ~ 18887011 (-)
G29279 NA other downstream 75319 18070987 ~ 18072909 (-)
G29263 NA other downstream 198510 17949157 ~ 17949718 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other downstream 618913 17472330 ~ 17529315 (-)
G29158 NA other downstream 868055 17272955 ~ 17280173 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 2012513 16125830 ~ 16135715 (-)
LOC113537624 NA other upstream 598397 18794025 ~ 18816812 (-)
trnag-ucc NA other upstream 620631 18816259 ~ 18816330 (-)
trnap-ugg NA other upstream 621499 18817127 ~ 18817198 (-)
glmnb LOC108272089 other upstream 1807731 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 2164094 20359722 ~ 20429325 (-)

Expression


Co-expression Network