G29439


Basic Information

Item Value
gene id G29439
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18452468 ~ 18452976 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34718
TGACACTGTTCCAGTGCCTCTATATCAGTGTCTCCTCCAACGTATTTCTGTTATTGCAAGTATTATTTGTAATCTCAATGTAATGACCTCGGTTTTCAGTCCTTCCAGGCAGCATGCTAAgctagtaataaataaaatgagagatttatttatgtaattccTGCTCTGGCCTTTGGGACAGTGTGTAACCACAGAGTTCATCGCCATCCGACTGTATCAGCAGCAGCTTAGTGACACATAATGAGTATTGATACGCAGACGGCGCAGATGTGTGGGTGGGTGCGAGtctgtgtgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtggatttCACCTtccagaaagagaaggaaaggaggGAGGACTGAGAACAAGGGCAGCCTGAGGGAGCAGAAAGCCTAGAAAAAGGAGTGCAGGAAAAAGCCcagtgaggaagaagagagtGGGATGAGAAGAGACGAAGAGTGCAGGAAGGAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34718 True 487 lncRNA 0.47 2 18452468 18452976

Neighbor

gene id symbol gene type direction distance location
lrrc8c lrrc8c,LOC108272152,LOC108413226,LOC103030093,LOC107749978,LOC107593158,LOC107698887 coding downstream 325556 18116405 ~ 18126912 (-)
lrrc8db lrrc8db,LOC108272026,LOC108413222,LOC107730703,LOC107749977,LOC107564626,LOC107675437 coding downstream 346189 18094167 ~ 18106279 (-)
znf326 znf326 coding downstream 362152 18083721 ~ 18090316 (-)
LOC117599332 NA coding downstream 657117 17794638 ~ 17795351 (-)
brdt brdt,LOC107564438,LOC106584160 coding downstream 796258 17637150 ~ 17656210 (-)
hs2st1b hs2st1b,LOC108271533,LOC108427652,LOC107694133,LOC107679861,LOC107557741,LOC106560611 coding upstream 48562 18501538 ~ 18586226 (-)
trnae-cuc_6 NA coding upstream 124248 18577224 ~ 18577295 (-)
LOC113534471 LOC108271530,LOC108427638 coding upstream 163001 18615977 ~ 18623608 (-)
sox14 sox14,LOC103365676,LOC100695210 coding upstream 235622 18688598 ~ 18691082 (-)
hdlbpa hdlbp coding upstream 367081 18820057 ~ 18835789 (-)
G29237 NA non-coding downstream 609648 17784475 ~ 17842820 (-)
G29223 NA non-coding downstream 738103 17700761 ~ 17714365 (-)
G29213 NA non-coding downstream 814451 17637327 ~ 17638017 (-)
G29196 NA non-coding downstream 941013 17487361 ~ 17511455 (-)
G29176 NA non-coding downstream 984311 17454285 ~ 17468157 (-)
G29541 NA non-coding upstream 161381 18614357 ~ 18614724 (-)
G29542 NA non-coding upstream 161893 18614869 ~ 18615874 (-)
G29551 NA non-coding upstream 181102 18634078 ~ 18634357 (-)
G29612 NA non-coding upstream 431008 18883984 ~ 18887011 (-)
G29614 farp2 non-coding upstream 437741 18890717 ~ 18895805 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 256840 18148228 ~ 18195628 (-)
G29279 NA other downstream 379559 18070987 ~ 18072909 (-)
G29263 NA other downstream 502750 17949157 ~ 17949718 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other downstream 923153 17472330 ~ 17529315 (-)
G29158 NA other downstream 1172295 17272955 ~ 17280173 (-)
LOC113537624 NA other upstream 341049 18794025 ~ 18816812 (-)
trnag-ucc NA other upstream 363283 18816259 ~ 18816330 (-)
trnap-ugg NA other upstream 364151 18817127 ~ 18817198 (-)
glmnb LOC108272089 other upstream 1550383 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 1906746 20359722 ~ 20429325 (-)

Expression


Co-expression Network